View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_149 (Length: 206)
Name: NF17651_low_149
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_149 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 34686647 - 34686834
Alignment:
| Q |
5 |
atatctaacttaccctatgcgcattccagcatgaccagtggttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtat |
104 |
Q |
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| T |
34686647 |
atatctaacttaccctatgcgcattccagcatgaccagtgcttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtat |
34686746 |
T |
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| Q |
105 |
tgcggccagtagtaggcaagatcatgaaccagaagtccttgacttctattgaccttagacttcctcacatgtccatcaggattatttg |
192 |
Q |
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| T |
34686747 |
tgcggccagtagtaggcaagatcatgaaccagaagtccttgacttctattgaccttagacttcctcacatgtccatcaggattatttg |
34686834 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 43612595 - 43612712
Alignment:
| Q |
13 |
cttaccctatgcgcattccagcatgaccagtggttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggcca |
112 |
Q |
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| T |
43612595 |
cttaccctatgcgcgttccagcgtgaccggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggcca |
43612694 |
T |
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| Q |
113 |
gtagtaggcaagatcatg |
130 |
Q |
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| T |
43612695 |
ataataggcaaggtcatg |
43612712 |
T |
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