View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_15 (Length: 551)

Name: NF17651_low_15
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_15
NF17651_low_15
[»] chr2 (3 HSPs)
chr2 (83-533)||(38472094-38472543)
chr2 (200-350)||(38466281-38466431)
chr2 (151-205)||(38466552-38466606)
[»] scaffold0004 (1 HSPs)
scaffold0004 (200-300)||(36631-36728)
[»] chr1 (1 HSPs)
chr1 (444-502)||(6138399-6138458)
[»] chr3 (3 HSPs)
chr3 (445-502)||(43979422-43979480)
chr3 (444-502)||(17730923-17730983)
chr3 (444-502)||(19032154-19032214)
[»] chr8 (1 HSPs)
chr8 (444-485)||(7284462-7284503)
[»] chr7 (1 HSPs)
chr7 (434-467)||(35397212-35397245)
[»] chr6 (1 HSPs)
chr6 (445-502)||(32342288-32342345)
[»] chr4 (1 HSPs)
chr4 (444-485)||(4528730-4528771)
[»] scaffold0027 (1 HSPs)
scaffold0027 (427-467)||(11795-11835)


Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 83 - 533
Target Start/End: Complemental strand, 38472543 - 38472094
Alignment:
Q  83 ttattcaat-tatgtcaggttcttagtttggcaacaacaacaatggatgaaaaggtaactcagaggacagtgcagaatctctcaattaaagaaaacactt 181  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  38472543 ttattcaatgtatgtcaagttcttagtttggcaacaacaacaatggatgaaaaggtaactcagaggac--tgcagaatctctcaattaaagaaaacactt 38472446  T
Q  182 acttcctgaatgtgaatgtcaagaaattgcataaggttgtcagtacatgttttcatactcttctcaacaattgttgcaataacatcttggcttaatgaaa 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38472445 acttcctgaatgtgaatgtcaagaaattgcataaggttgtcagtacatgttttcatactcttctcaacaattgttgcaataacatcttggcttaatgaaa 38472346  T
Q  282 cttcaggtgaattataggctgtagcagtaactattgatgttttcgcgatctttgaaatgctaaaatcctatgaaaaatgaaaattgtaggacatgtgaat 381  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38472345 cttcaggtgaattataggctgtagcaggaactattgatgttttcgcgatctttgaaatgttaaaatcctatgaaaaatgaaaattgtaggacatgtgaat 38472246  T
Q  382 ccataatcatcacgagcatacatcaattgcgttggaaaaaaccggcataaagaaaataaatgaacacaagaacataacgtggaaacttccaaactggaga 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38472245 ccataatcatcacgagcatacatcaattgcgttggaaaaaaccggcataaagaaaataaatgaacacaagaacataacgtggaaacttccaaaccggaga 38472146  T
Q  482 aaaaccacgacccttgtctaatgaaaaccagagagtaacaccacatgcaaat 533  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38472145 aaaaccacgacccttgtctaatgacaaccagagagtaacaccacatgcaaat 38472094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 38466431 - 38466281
Alignment:
Q  200 tcaagaaattgcataaggttgtcagtacatgttttcatactcttctcaacaattgttgcaataacatcttggcttaatgaaacttcaggtgaattatagg 299  Q
    ||||||||  |||||||||  || ||||||||||||||||||||||| ||  ||||||||||||| ||||||||||| |||||||||||||||||||| |    
T  38466431 tcaagaaaccgcataaggtcatcggtacatgttttcatactcttctcgaccgttgttgcaataacctcttggcttaaagaaacttcaggtgaattataag 38466332  T
Q  300 ctgtagcagtaactattgatgttttcgcgatctttgaaatgctaaaatcct 350  Q
    ||||||||| || | ||||||||||  | ||| ||||||||  ||||||||    
T  38466331 ctgtagcaggaaatgttgatgtttttaccatccttgaaatgtgaaaatcct 38466281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 38466606 - 38466552
Alignment:
Q  151 gtgcagaatctctcaattaaagaaaacacttacttcctgaatgtgaatgtcaaga 205  Q
    ||||||||||| ||||||||||| ||||||||||||||||| |||  ||||||||    
T  38466606 gtgcagaatctatcaattaaagataacacttacttcctgaaggtgtttgtcaaga 38466552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 36631 - 36728
Alignment:
Q  200 tcaagaaattgcataaggttgtcagtacatgttttcatactcttctcaacaattgttgcaataacatcttggcttaatgaaacttcaggtgaattatagg 299  Q
    ||||||||| ||||||| ||||||| | || | ||||||||||||||||||   |||||||| |||||||||||||| ||| ||||||||| ||||||||    
T  36631 tcaagaaatcgcataagattgtcagcatatttcttcatactcttctcaaca---gttgcaatcacatcttggcttaaagaatcttcaggtggattatagg 36727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 502
Target Start/End: Complemental strand, 6138458 - 6138399
Alignment:
Q  444 aacacaagaacataacgtggaaacttccaaactggag-aaaaaccacgacccttgtctaa 502  Q
    |||||||||| |||||||||||||| | ||||| ||| ||||||||||||| ||||||||    
T  6138458 aacacaagaatataacgtggaaactccaaaactagagaaaaaaccacgaccgttgtctaa 6138399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 43979480 - 43979422
Alignment:
Q  445 acacaagaacataacgtggaaacttccaaactggaga-aaaaccacgacccttgtctaa 502  Q
    ||||||||| |||||||||||||| | |||||||||| |||||||||||| || |||||    
T  43979480 acacaagaatataacgtggaaactccaaaactggagaaaaaaccacgaccgttatctaa 43979422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 17730923 - 17730983
Alignment:
Q  444 aacacaagaacataacgtggaaacttccaaactggag--aaaaaccacgacccttgtctaa 502  Q
    |||||||||| |||||||||||||| | |||| ||||  ||||||||||||| ||||||||    
T  17730923 aacacaagaatataacgtggaaactccaaaaccggaggaaaaaaccacgaccgttgtctaa 17730983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 19032154 - 19032214
Alignment:
Q  444 aacacaagaacataacgtggaaacttccaaactggag--aaaaaccacgacccttgtctaa 502  Q
    |||||||||| |||||||||||||| | |||| ||||  ||||||||||||| ||||||||    
T  19032154 aacacaagaatataacgtggaaactccaaaaccggaggaaaaaaccacgaccgttgtctaa 19032214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 485
Target Start/End: Original strand, 7284462 - 7284503
Alignment:
Q  444 aacacaagaacataacgtggaaacttccaaactggagaaaaa 485  Q
    |||||||||| |||||||||||||||| ||| ||||||||||    
T  7284462 aacacaagaatataacgtggaaacttcaaaattggagaaaaa 7284503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 467
Target Start/End: Original strand, 35397212 - 35397245
Alignment:
Q  434 aaaataaatgaacacaagaacataacgtggaaac 467  Q
    |||||||| |||||||||||||||||||||||||    
T  35397212 aaaataaaggaacacaagaacataacgtggaaac 35397245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 32342345 - 32342288
Alignment:
Q  445 acacaagaacataacgtggaaacttccaaactggagaaaaaccacgacccttgtctaa 502  Q
    ||||||||| |||||||||||||| | ||| |||||||||||||| | | ||||||||    
T  32342345 acacaagaatataacgtggaaactccaaaattggagaaaaaccactatcgttgtctaa 32342288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 485
Target Start/End: Complemental strand, 4528771 - 4528730
Alignment:
Q  444 aacacaagaacataacgtggaaacttccaaactggagaaaaa 485  Q
    |||||||||| |||||||||||||||| |||| |||||||||    
T  4528771 aacacaagaatataacgtggaaacttcgaaaccggagaaaaa 4528730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 11835 - 11795
Alignment:
Q  427 cataaagaaaataaatgaacacaagaacataacgtggaaac 467  Q
    |||| |||||||||||||||||||||| ||| |||||||||    
T  11835 catagagaaaataaatgaacacaagaatatatcgtggaaac 11795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University