View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_2 (Length: 714)

Name: NF17651_low_2
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_2
NF17651_low_2
[»] chr2 (12 HSPs)
chr2 (19-392)||(29502394-29502767)
chr2 (454-674)||(29502829-29503049)
chr2 (23-326)||(29488200-29488507)
chr2 (83-326)||(30256565-30256807)
chr2 (23-327)||(29490297-29490605)
chr2 (140-262)||(29505459-29505581)
chr2 (140-261)||(29549115-29549236)
chr2 (159-261)||(29511100-29511202)
chr2 (159-327)||(29507214-29507382)
chr2 (675-714)||(29503078-29503117)
chr2 (159-292)||(29535323-29535456)
chr2 (159-261)||(29518218-29518320)
[»] scaffold0186 (1 HSPs)
scaffold0186 (159-208)||(9211-9260)
[»] chr8 (1 HSPs)
chr8 (159-208)||(18874708-18874757)
[»] chr1 (1 HSPs)
chr1 (176-235)||(49721337-49721396)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 29502394 - 29502767
Alignment:
Q  19 caagaatcatggcaaacgaagtggttctgttggatacatggtttagcatgtt----atgagagttaagattgcattagctgaaaaaagtgttaaatacga 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  29502394 caagagtcatggcaaacgaagtggttctgttggatacatggtttagcatgtttgggatgagagttaagattgcattagctgaaaaaagtgttaaatacga 29502493  T
Q  115 gtgtaaagaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29502494 gtgtaaagaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatt 29502593  T
Q  215 tgtgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctcacccttatgagaaagctcaaactagatttt 314  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||| |||||||||    
T  29502594 tgtgaatctgcaatcattgtgcagtacatagatgaagtttggaatgataaagcttcattcatgccctctgatccgtatgagagagctcaagctagatttt 29502693  T
Q  315 ggtttgattatatatatagacaaaaaggtgacattttttatttgttttcctatgattttcatccttaactttggtggg 392  Q
    ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29502694 ggtttgat----tatatagacaaaaaggtgacattttttatttgttttcctatgattttcatccttaactttggtggg 29502767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 454 - 674
Target Start/End: Original strand, 29502829 - 29503049
Alignment:
Q  454 ctgtagattagaagattggaaattaaatttcattctcttgtttttagcatctgaaattgaattttcttgttgatgtatttacttttagtatagcaaagag 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29502829 ctgtagattagaagattggaaattaaatttcattctcttgtttttagcatctgaaattgaattttcttgttgatgtatttacttttagtatagcaaagag 29502928  T
Q  554 agccaagtgagatatatctttgctttttggtaccttatttctaagcttttaaatcttctagtacttagttttgtttggtttgacggttttgagtttatct 653  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29502929 agccaagtgagatatatctttgctttttggtaccttatttctaagcttttaaatcttctagtacttagttttatttggtttgacggttttgagtttatct 29503028  T
Q  654 attgccatatatactcgtgag 674  Q
    |||||||||||||||||||||    
T  29503029 attgccatatatactcgtgag 29503049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 29488200 - 29488507
Alignment:
Q  23 aatcatggcaaacgaagtggttctgttggatacatggtttagcatgtt----atgagagttaagattgcattagctgaaaaaagtgttaaatacgagtgt 118  Q
    ||||||||||||||| ||  ||||||| |||||||||  |||||||||    |||||||  |  ||||||||||||||||| ||||||||||| ||||      
T  29488200 aatcatggcaaacgaggtaattctgttagatacatgggctagcatgtttggtatgagagcaagaattgcattagctgaaaagagtgttaaatatgagtac 29488299  T
Q  119 aaagaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtg 218  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29488300 aaagaagaagatctcagaaataagagtcctttacttcttcaaatgaacccaattcacaacaagattccagttcttatccataatggaaaatccatttgtg 29488399  T
Q  219 aatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctcacccttatgagaaagctcaaactagattttggtt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||| |    
T  29488400 aatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctgatccttatgagagagctcaagctagattttgggt 29488499  T
Q  319 tgattata 326  Q
    ||||||||    
T  29488500 tgattata 29488507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 83 - 326
Target Start/End: Complemental strand, 30256807 - 30256565
Alignment:
Q  83 attgcattagctgaaaaaagtgttaaatacgagtgtaaagaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaaga 182  Q
    ||||||||||||||||| ||||||||||| ||||  ||||||||| |||| |||||||||||||||||||||||| || |||| ||||||||||||||||    
T  30256807 attgcattagctgaaaagagtgttaaatatgagtacaaagaagaagatcttagaaataagagtcctttacttcttcaa-tgaatccaattcacaagaaga 30256709  T
Q  183 ttccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30256708 ttccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgtcttc 30256609  T
Q  283 tcacccttatgagaaagctcaaactagattttggtttgattata 326  Q
    |||||||||||||||||||||| ||||||||||| |||| ||||    
T  30256608 tcacccttatgagaaagctcaagctagattttgggttgagtata 30256565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 29490297 - 29490605
Alignment:
Q  23 aatcatggcaaacgaagtggttctgttggatacatggtttagcatgtt----atgagagttaagattgcattagctgaaaaaagtgttaaatacgagtgt 118  Q
    ||||||||||||||| || ||| |||||||||||||| ||||||||||    ||||| ||||  |||||||||||||||||  | ||| |||| ||||      
T  29490297 aatcatggcaaacgaggtagttttgttggatacatgggttagcatgtttggtatgagggttagaattgcattagctgaaaagggagttcaatatgagtac 29490396  T
Q  119 aaagaagaaaatctcagaaataagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtg 218  Q
    |||||||||||||| ||| |||| |||||| |||||||| | ||||| |||||||| ||||| |||||||||||||| |||||||||||| |  ||||||    
T  29490397 aaagaagaaaatcttagagataaaagtcctatacttcttcagatgaatccaattcataagaaaattccagttcttattcataatggaaaacctgtttgtg 29490496  T
Q  219 aatctgcaattattgtgcaatacatagatgaagtttggaatgataaagcttcattcatgccttctcacccttatgagaaagctcaaactagattttggtt 318  Q
    |||| || |||||||| || || |||||||| |||||||||||||||||| |||||||||||||| | |||||||||| ||||||| ||||||||||| |    
T  29490497 aatcagctattattgtccagtatatagatgaggtttggaatgataaagctccattcatgccttctgatccttatgagagagctcaagctagattttgggt 29490596  T
Q  319 tgattatat 327  Q
    |||||||||    
T  29490597 tgattatat 29490605  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 140 - 262
Target Start/End: Complemental strand, 29505581 - 29505459
Alignment:
Q  140 aagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaat 239  Q
    |||||||||||||| ||  ||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||   || ||||||  |||    
T  29505581 aagagtcctttactcctacaaatgaatccaattcacaagaaaattccagttctaatccataatggcaaatccatttgtgagtcactaaatattgttgaat 29505482  T
Q  240 acatagatgaagtttggaatgat 262  Q
    | || ||||| ||||||||||||    
T  29505481 atattgatgaggtttggaatgat 29505459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 29549236 - 29549115
Alignment:
Q  140 aagagtcctttacttcttgaaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaat 239  Q
    |||||||||||  | || |||||||||||  |||| ||||| || || |||||||| |||||||||||| ||||||||||||||  ||||  ||| ||||    
T  29549236 aagagtcctttgttgctagaaatgaacccggttcagaagaaaatccctgttcttattcataatggaaaacccatttgtgaatctttaattgctgttcaat 29549137  T
Q  240 acatagatgaagtttggaatga 261  Q
    | || |||||||||||||||||    
T  29549136 atattgatgaagtttggaatga 29549115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 29511202 - 29511100
Alignment:
Q  159 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaa 258  Q
    ||||||||||  |||| ||||| || ||||||||||| |||||||| ||||| ||||||||||||  ||||  ||| ||||| || ||||||||||||||    
T  29511202 aaatgaaccctgttcataagaaaatcccagttcttattcataatggtaaatcaatttgtgaatctttaattgctgttcaatatattgatgaagtttggaa 29511103  T
Q  259 tga 261  Q
    |||    
T  29511102 tga 29511100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 159 - 327
Target Start/End: Complemental strand, 29507382 - 29507214
Alignment:
Q  159 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaa 258  Q
    ||||||||||  |||||||||| || || ||||| || |||||||| ||| |  |||||||||||  ||||  ||| ||||| || ||||| ||||||||    
T  29507382 aaatgaaccctgttcacaagaaaatccctgttctcattcataatggtaaaccagtttgtgaatctttaattgctgttcaatatattgatgaggtttggaa 29507283  T
Q  259 tgataaagcttcattcatgccttctcacccttatgagaaagctcaaactagattttggtttgattatat 327  Q
    ||||||| || | ||| |||||||| | || ||| ||||||| ||| ||||||| |||  |||||||||    
T  29507282 tgataaatctcctttcttgccttctgatccatatcagaaagcacaagctagattctgggctgattatat 29507214  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 675 - 714
Target Start/End: Original strand, 29503078 - 29503117
Alignment:
Q  675 ttatgagattctgatatgttgctttcagcttatttccata 714  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29503078 ttatgagattctgatatgttgctttcagcttatttccata 29503117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 29535456 - 29535323
Alignment:
Q  159 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaa 258  Q
    |||||||||| ||||||||||| || || ||||| || |||||||| ||||| ||||||||||||  |||   ||| || || || ||||| ||||||||    
T  29535456 aaatgaaccctattcacaagaaaatccctgttctaattcataatggtaaatcaatttgtgaatctttaatggctgttcagtatattgatgaggtttggaa 29535357  T
Q  259 tgataaagcttcattcatgccttctcacccttat 292  Q
    ||| ||| |||| ||  |||||||| | ||||||    
T  29535356 tgagaaatcttctttgttgccttctgatccttat 29535323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 159 - 261
Target Start/End: Complemental strand, 29518320 - 29518218
Alignment:
Q  159 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtgcaatacatagatgaagtttggaa 258  Q
    ||||||||||  |||| ||||| || || |||||||| |||||||| ||||| ||||||||||||  ||||  ||| || || || ||||| ||||||||    
T  29518320 aaatgaaccctgttcataagaaaatccctgttcttattcataatggtaaatcaatttgtgaatctttaattgctgttcagtatattgatgaggtttggaa 29518221  T
Q  259 tga 261  Q
    |||    
T  29518220 tga 29518218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 9260 - 9211
Alignment:
Q  159 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaa 208  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  9260 aaatgaacccaattcacaagaagattcctgttcttatccataagggaaaa 9211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 18874757 - 18874708
Alignment:
Q  159 aaatgaacccaattcacaagaagattccagttcttatccataatggaaaa 208  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  18874757 aaatgaacccaattcacaagaagattcctgttcttatccataagggaaaa 18874708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 49721337 - 49721396
Alignment:
Q  176 aagaagattccagttcttatccataatggaaaatccatttgtgaatctgcaattattgtg 235  Q
    |||||||| |||||||| ||| ||||||| ||| ||||||||||||||||||||||||||    
T  49721337 aagaagatcccagttctcatcaataatggcaaacccatttgtgaatctgcaattattgtg 49721396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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