View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_24 (Length: 465)
Name: NF17651_low_24
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 31099711 - 31100147
Alignment:
| Q |
18 |
tcatatagagaccgtcttgaatgtcgccgactcaaataagcttaaaacagatgatggaaacataggaattgaaacaagcaaaacaccacttaaatctgaa |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31099711 |
tcatatagagaccgtcttgaatgtcgtcgactcaaataagcttaaaacagatgatggaaacaaaggaattgaaacaagcaaaacaccacttaaatctgaa |
31099810 |
T |
|
| Q |
118 |
gatgatgaaccttggaatcctagtaagcccttacctgaaggctttgtaccttggcttgagcatgatcatgataagtgtattgcagaaaaattgggaatcg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31099811 |
gatgatgaaccttggaatcctagtaagcccttacctgaaggctttgtaccttggcttgagcatgatcatgataagtgtattgcagaacaattgggaatcg |
31099910 |
T |
|
| Q |
218 |
accttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgtatatgttatataatattaattaatgtatgctgtgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31099911 |
accttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgtatatgttatataatattaattaatgtatgctgtgaat |
31100010 |
T |
|
| Q |
318 |
atcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaataccatctttttgggaagtaaatgatttctagtattcaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31100011 |
atcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaataccatctttttgggaagtaaatgatttctagtattcaaag |
31100110 |
T |
|
| Q |
418 |
ttgatacgtatctgaatattcataatcactcttctct |
454 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
31100111 |
ttgatacgtatctgaatattcataatcactcttctct |
31100147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 31141640 - 31141204
Alignment:
| Q |
18 |
tcatatagagaccgtcttgaatgtcgccgactcaaataagcttaaaacagatgatggaaacataggaattgaaacaagcaaaacaccacttaaatctgaa |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
31141640 |
tcatatagagaccgtcttgaatgtcgtcgactcaaataagcttaaaacagatgatggaaacaaaggaattgaaacaagcaaaacaccacttaaatctgaa |
31141541 |
T |
|
| Q |
118 |
gatgatgaaccttggaatcctagtaagcccttacctgaaggctttgtaccttggcttgagcatgatcatgataagtgtattgcagaaaaattgggaatcg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31141540 |
gatgatgaaccttggaatcctagtaagcccttacctgaaggctttgtaccttggcttgagcatgatcatgataagtgtattgcagaacaattgggaatcg |
31141441 |
T |
|
| Q |
218 |
accttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgtatatgttatataatattaattaatgtatgctgtgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141440 |
accttgatgctccgataccagcggagtgtaagctgacctcacttgttcttcagtatttgatgtatatgttatataatattaattaatgtatgctgtgaat |
31141341 |
T |
|
| Q |
318 |
atcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaataccatctttttgggaagtaaatgatttctagtattcaaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141340 |
atcaacctctgatatcttcttctgaagttcactgtgtgtatattatattggcattcaaataccatctttttgggaagtaaatgatttctagtattcaaag |
31141241 |
T |
|
| Q |
418 |
ttgatacgtatctgaatattcataatcactcttctct |
454 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
31141240 |
ttgatacgtatctgaatattcataatcactcttctct |
31141204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 31147367 - 31147305
Alignment:
| Q |
379 |
ccatctttttgggaagtaaatgatttctagtattc-aaagttgatacgtatctgaatattcat |
440 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31147367 |
ccatctttttgggaagtaaatgatttctagtattcaaaagttgatacgtatctgaatattcat |
31147305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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