View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_25 (Length: 464)
Name: NF17651_low_25
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_25 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 109428 - 109057
Alignment:
| Q |
11 |
agcataggcatcaaaaacctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109428 |
agcataggcatcaaaaacctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttc |
109329 |
T |
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| Q |
111 |
caaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagtta |
210 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109328 |
caaaggagtatattcaattcccaaactcgttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagtta |
109229 |
T |
|
| Q |
211 |
acaaagtgaagacgatattagaaaaatgtaaatacagaaatggacagaatgatgaatcatttttatagtaaccattaacctatgatttcggatattaaac |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
109228 |
acaaagtgaagacgatattagaaaaatgtaaatacagaaatggacagaatgatgaatca-ttttatagtaaccattaacctatgatttcggatattaaac |
109130 |
T |
|
| Q |
311 |
aacatttgtaggactagccacatttaaagtttctgctatatatacttggccttattttagaaacacttaattcagta |
387 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||| |
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| T |
109129 |
aacatttgtaggactagccacatttaaagttgctgc----tatacttggccttattttagaaacacttgattcagta |
109057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 90613 - 90400
Alignment:
| Q |
29 |
ctaaacaaggagatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaat |
128 |
Q |
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| T |
90613 |
ctaaacaaggagataccacaaattaaaggttggcgaacttcttttctttcaaactttcaacagtctccttgatgctcacttccaaaggagtatattcaag |
90514 |
T |
|
| Q |
129 |
tcccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagttaacaaagtgaagacgatat |
228 |
Q |
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|||||| || || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
90513 |
tcccaagcttttcgccttttctttggaaacctgatatataggcacatatggcttatcgtccgcacacctggtaacatagttgacaaagtgaaaacgatat |
90414 |
T |
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| Q |
229 |
tagaaaaatgtaaa |
242 |
Q |
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||||||||| |||| |
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| T |
90413 |
tagaaaaatctaaa |
90400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 109033 - 108966
Alignment:
| Q |
379 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtg |
446 |
Q |
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| T |
109033 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtg |
108966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 2709120 - 2708966
Alignment:
| Q |
39 |
agatatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttcct--------tgatgctcacttccaaaggagtatattcaattc |
130 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||| ||||||| ||||||||| |||| ||||||||| |
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| T |
2709120 |
agatatcacaaattaaaagttggcgaacttcttttctttcaaattttccacagtctcctactctccttgatgctgacttccaaaagagttaattcaattc |
2709021 |
T |
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| Q |
131 |
ccaaactctttgccttttctttggaaaactgatatgtaggcacatatggcttatc |
185 |
Q |
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|||| ||||| ||||||||||||||| |||||||||||||| || |||||||| |
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| T |
2709020 |
ccaagctcttgaccttttctttggaaacctgatatgtaggcatgtacggcttatc |
2708966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 90190 - 90123
Alignment:
| Q |
379 |
aattcagtacaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtg |
446 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
90190 |
aattcagtacaaattagcaattttgcataacaattaatctacagaagacacaaaaatagaggaaggtg |
90123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 385
Target Start/End: Complemental strand, 90366 - 90211
Alignment:
| Q |
234 |
aaatgtaaatacagaaatggacagaatgatgaatcat----------ttttatagtaaccattaacctatg-atttcggatattaaacaacatttgtagg |
322 |
Q |
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||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |||||| ||| |||||| |||| |||| |
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| T |
90366 |
aaatgtaaatacagaaacggacagaatgatgaatcatgtagggctcatcttatagtaaccattaacctatgaatttcgagtataaaacaaaatttctagg |
90267 |
T |
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| Q |
323 |
actagccacatttaaagtttctgctatatatacttggccttattttagaaacacttaattcag |
385 |
Q |
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||| || |||||||||| | ||||||||||| ||||||| ||||||||||||||| |
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| T |
90266 |
actttgcatatttaaagttgc-------tatacttggccgtattttaaaaacacttaattcag |
90211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 25936549 - 25936423
Alignment:
| Q |
46 |
acaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctttgcct |
145 |
Q |
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||||||||||||||||||| ||| || ||| | || ||||| ||||| ||||||| | | |||||||||| |||| | || |||||||||||||| |||| |
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| T |
25936549 |
acaaattaaaagttgacgatctttttctctctgaagctttccacagtctccttgagggtgacttccaaagaagtaaactcgattcccaaactcttagcct |
25936450 |
T |
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| Q |
146 |
tttctttggaaaactgatatgtaggca |
172 |
Q |
| |
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|||| || |||| ||||||||| |||| |
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| T |
25936449 |
tttccttagaaatctgatatgttggca |
25936423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 26105151 - 26105073
Alignment:
| Q |
94 |
tccttgatgctcacttccaaaggagtatattcaattcccaaactctttgccttttctttggaaaactgatatgtaggca |
172 |
Q |
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||||||| ||| | ||||||||||||| | || ||||| || ||||| |||||||| ||||||| ||||||||| |||| |
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| T |
26105151 |
tccttgaggctgatttccaaaggagtaaactcgattccaaagctcttggccttttccttggaaatctgatatgttggca |
26105073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 6089 - 5922
Alignment:
| Q |
41 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
140 |
Q |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
6089 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
5990 |
T |
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| Q |
141 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
208 |
Q |
| |
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||||||||||||||||| |||| |||| ||| | ||||||||||| || |||||| ||||||||| |
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| T |
5989 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
5922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 29550416 - 29550249
Alignment:
| Q |
41 |
atatcacaaattaaaagttgacgaacttcttttctttcaaactttcaacagtttccttgatgctcacttccaaaggagtatattcaattcccaaactctt |
140 |
Q |
| |
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||||||||||||| ||||| | ||||| || ||||| |||||||| || | || | | ||||||||||| ||| || |||||| ||| || |||| |
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| T |
29550416 |
atatcacaaattagaagttagcaaactttttatctttgaaactttctacgatctctctaaggctcacttccaggggaataaattcaactcctaaggtctt |
29550317 |
T |
|
| Q |
141 |
tgccttttctttggaaaactgatatgtaggcacatatggcttatcgtccgcacacctggtaacatagt |
208 |
Q |
| |
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||||||||||||||||| |||| |||| ||| | ||||||||||| || |||||| ||||||||| |
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| T |
29550316 |
tgccttttctttggaaacctgaaatgtttgcatcaaaggcttatcgtctgcgcacctgataacatagt |
29550249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 29556792 - 29556747
Alignment:
| Q |
122 |
attcaattcccaaactctttgccttttctttggaaaactgatatgt |
167 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |||| |||| |
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| T |
29556792 |
attcaattcccaacgtctttgccttttctttggaaatctgaaatgt |
29556747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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