View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_29 (Length: 430)

Name: NF17651_low_29
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_29
NF17651_low_29
[»] chr1 (3 HSPs)
chr1 (1-414)||(15587684-15588104)
chr1 (196-233)||(26070937-26070974)
chr1 (207-239)||(25694424-25694456)
[»] chr5 (2 HSPs)
chr5 (196-235)||(27488459-27488498)
chr5 (196-233)||(13789730-13789767)
[»] chr7 (1 HSPs)
chr7 (205-234)||(44682563-44682592)
[»] chr3 (2 HSPs)
chr3 (196-233)||(53441905-53441942)
chr3 (205-233)||(12747819-12747847)
[»] chr2 (16 HSPs)
chr2 (200-233)||(5109361-5109394)
chr2 (196-233)||(40430779-40430816)
chr2 (196-237)||(45571142-45571183)
chr2 (196-237)||(45574809-45574850)
chr2 (196-237)||(45578476-45578517)
chr2 (196-237)||(45582143-45582184)
chr2 (196-237)||(45585810-45585851)
chr2 (196-237)||(45589477-45589518)
chr2 (196-237)||(45593144-45593185)
chr2 (196-237)||(45596811-45596852)
chr2 (196-237)||(45600478-45600519)
chr2 (196-237)||(45604145-45604186)
chr2 (196-237)||(45607812-45607853)
chr2 (196-237)||(45611479-45611520)
chr2 (196-237)||(45615146-45615187)
chr2 (197-233)||(11794563-11794599)
[»] chr8 (1 HSPs)
chr8 (205-233)||(8793841-8793869)
[»] chr4 (1 HSPs)
chr4 (205-233)||(17236891-17236919)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 15588104 - 15587684
Alignment:
Q  1 tgcagttgggtctgatgatcgctgttggcgtcgtgtgttcttcttagttgtggtgttggtttcgttgtcgattgattcatgtcttgattttggtattaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15588104 tgcagttgggtctgatgatcgctgttggcgtcgtgtgttcttcttagttgtggtgttggtttcgttgtcgattgattcatgtcttgattttggtattaga 15588005  T
Q  101 tgtcgaatcttggacgatttttcttttggttttgatgatttgcttttacgctctacnnnnnnnnnnnn--------tagtttttaagaagagacgatatt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||| || || |     
T  15588004 tgtcgaatcttggacgatttttcttttggttttgatgatttgcttttacgctctacaaaaacaaaaacaaaaaaaatagtttttaagaagaaac-atgtc 15587906  T
Q  193 gatagtaaactgtttcttataaataggaccggagagagtatatgcaaaccttctggtggctgggtaggtttctctgctgctccagatgggtttgttgatt 292  Q
    | |||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||    
T  15587905 ggtagtaaaccgtttcttataaataggaccggaggcagtatatgcaaaccttctgttggctgggtaggtttctctgctcctccaggcgggtttgttgatt 15587806  T
Q  293 tatattcattcatctgcataaaatttaaaattccacacataataaggctttatgataaagaattaaaaactaattaaatgataatatataagagattaac 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15587805 tatattcattcatctgcataaaatttaaaattccacacataataaggctttatgataaagaattaaaaactaattaaatgataatatataagagattaac 15587706  T
Q  393 gaaaatagtacccagcttggtg 414  Q
    ||||||||||||||||||||||    
T  15587705 gaaaatagtacccagcttggtg 15587684  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 26070937 - 26070974
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  26070937 agtaaaatgtttcttataaataagaccggagagagtat 26070974  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 25694424 - 25694456
Alignment:
Q  207 tcttataaataggaccggagagagtatatgcaa 239  Q
    |||||||||||||||||||| ||||||||||||    
T  25694424 tcttataaataggaccggagggagtatatgcaa 25694456  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 27488459 - 27488498
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatat 235  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  27488459 agtaaattgtttcttatatataggaccggagagagtatat 27488498  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 13789767 - 13789730
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  13789767 agtaaaatgtttcttataaataggaccggagggagtat 13789730  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 44682592 - 44682563
Alignment:
Q  205 tttcttataaataggaccggagagagtata 234  Q
    ||||||||||||||||||||||||||||||    
T  44682592 tttcttataaataggaccggagagagtata 44682563  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 53441942 - 53441905
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  53441942 agtaaaatgtttcttataaataggaccggagggagtat 53441905  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 12747819 - 12747847
Alignment:
Q  205 tttcttataaataggaccggagagagtat 233  Q
    |||||||||||||||||||||||||||||    
T  12747819 tttcttataaataggaccggagagagtat 12747847  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 5109394 - 5109361
Alignment:
Q  200 aactgtttcttataaataggaccggagagagtat 233  Q
    |||| |||||||||||||||||||||||||||||    
T  5109394 aactttttcttataaataggaccggagagagtat 5109361  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 40430779 - 40430816
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtat 233  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40430779 agtaaattgtctcttataaataggaccggagagagtat 40430816  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45571142 - 45571183
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45571142 agtaaattgtttcttatatataggaccggagggagtatatgc 45571183  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45574809 - 45574850
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45574809 agtaaattgtttcttatatataggaccggagggagtatatgc 45574850  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45578476 - 45578517
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45578476 agtaaattgtttcttatatataggaccggagggagtatatgc 45578517  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45582143 - 45582184
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45582143 agtaaattgtttcttatatataggaccggagggagtatatgc 45582184  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45585810 - 45585851
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45585810 agtaaattgtttcttatatataggaccggagggagtatatgc 45585851  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45589477 - 45589518
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45589477 agtaaattgtttcttatatataggaccggagggagtatatgc 45589518  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45593144 - 45593185
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45593144 agtaaattgtttcttatatataggaccggagggagtatatgc 45593185  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45596811 - 45596852
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45596811 agtaaattgtttcttatatataggaccggagggagtatatgc 45596852  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45600478 - 45600519
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45600478 agtaaattgtttcttatatataggaccggagggagtatatgc 45600519  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45604145 - 45604186
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45604145 agtaaattgtttcttatatataggaccggagggagtatatgc 45604186  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45607812 - 45607853
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45607812 agtaaattgtttcttatatataggaccggagggagtatatgc 45607853  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45611479 - 45611520
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45611479 agtaaattgtttcttatatataggaccggagggagtatatgc 45611520  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 45615146 - 45615187
Alignment:
Q  196 agtaaactgtttcttataaataggaccggagagagtatatgc 237  Q
    |||||| ||||||||||| |||||||||||| ||||||||||    
T  45615146 agtaaattgtttcttatatataggaccggagggagtatatgc 45615187  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 11794563 - 11794599
Alignment:
Q  197 gtaaactgtttcttataaataggaccggagagagtat 233  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  11794563 gtaaaatgtttcttataaataggaccggagggagtat 11794599  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 8793841 - 8793869
Alignment:
Q  205 tttcttataaataggaccggagagagtat 233  Q
    |||||||||||||||||||||||||||||    
T  8793841 tttcttataaataggaccggagagagtat 8793869  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 17236891 - 17236919
Alignment:
Q  205 tttcttataaataggaccggagagagtat 233  Q
    |||||||||||||||||||||||||||||    
T  17236891 tttcttataaataggaccggagagagtat 17236919  T

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