View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_34 (Length: 423)
Name: NF17651_low_34
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_34 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 110 - 423
Target Start/End: Complemental strand, 33915727 - 33915414
Alignment:
| Q |
110 |
tggagggagtattattcaacatctatattttcatctaatatgagatttttaactcacacttgacacatccacattctctcctttctatgtgaaattcact |
209 |
Q |
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| T |
33915727 |
tggagggagtattattcaacatctacattttcatctaatatgagatttctaactcacacttgacacatccacattctctcctttctatgtgaaattcact |
33915628 |
T |
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| Q |
210 |
aagaactacgtctctctcctccacaaagttgaacgagactttaatactagagttgagacttccggggagcaacattaaggttggattattgtatatatag |
309 |
Q |
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| T |
33915627 |
aagaactacgtctctctcctccacaaagttgaacgagactttaatactagagttgagacttccggggagcaacattaaggttggattattgtatatatag |
33915528 |
T |
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| Q |
310 |
ggctaggaacaacctcacaaataaaattgaacaccacatcttcattcaaaattatcttaaagcattatatatacatatcctctaacttacatattatcaa |
409 |
Q |
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| T |
33915527 |
ggctaggaacaacctcacaaataaaattgaacaccacatcttcattcaaaattatcttaaagcattatatatacatatcctctaacttatatattatcaa |
33915428 |
T |
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| Q |
410 |
acatttactctttc |
423 |
Q |
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| T |
33915427 |
acatttactctttc |
33915414 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 38259345 - 38259391
Alignment:
| Q |
124 |
ttcaacatctatattttcatctaatatgagatttttaactcacactt |
170 |
Q |
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| T |
38259345 |
ttcaacatctattttttcatctaatatgagacttctaacttacactt |
38259391 |
T |
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