View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_38 (Length: 411)
Name: NF17651_low_38
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 148 - 337
Target Start/End: Original strand, 8023097 - 8023286
Alignment:
| Q |
148 |
aaggatttgtttagaacacatacgaaaatataaaaataaaagttttataggattttaatcgcatgtgttatgagcgtgaataatttaaaggaggctcaat |
247 |
Q |
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| T |
8023097 |
aaggatttgtttagaacacatacgaaaatataaaaataaaagttttataggattttaatcgcatgtgttatgagcgtgaataatttaaaggaggctcaat |
8023196 |
T |
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| Q |
248 |
ttcgagatgtgagagtttatagttctacatttggaaactttatttataagatgaaactcttcaattatagcgagggacgttgttatgtag |
337 |
Q |
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| T |
8023197 |
ttcgagatgtgagagtttatagttctacatttggaaactttatttataagatgaaactcttcaattatagcgagggacggagttatgtag |
8023286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 379
Target Start/End: Original strand, 8024156 - 8024201
Alignment:
| Q |
334 |
gtagtagtttcccatggccttggcccttgcaataattttgaggaac |
379 |
Q |
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| T |
8024156 |
gtagtagtttcccatggccttggcccttgcaagaattttgaggaac |
8024201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 8023005 - 8023041
Alignment:
| Q |
104 |
atattaaattaaactccaatagaatgtagctttcaca |
140 |
Q |
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| T |
8023005 |
atattaaattaaactccaatagaatgtagctttcaca |
8023041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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