View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_40 (Length: 409)

Name: NF17651_low_40
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_40
NF17651_low_40
[»] chr7 (6 HSPs)
chr7 (193-397)||(48091407-48091611)
chr7 (1-175)||(48091602-48091782)
chr7 (217-369)||(48074379-48074531)
chr7 (227-375)||(1807235-1807383)
chr7 (213-375)||(48100337-48100499)
chr7 (226-291)||(48083711-48083776)
[»] chr6 (1 HSPs)
chr6 (276-372)||(7388254-7388350)
[»] chr1 (2 HSPs)
chr1 (216-378)||(35355230-35355392)
chr1 (275-378)||(29769753-29769856)
[»] chr4 (1 HSPs)
chr4 (226-369)||(6343053-6343196)
[»] chr2 (1 HSPs)
chr2 (325-363)||(12945917-12945955)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 193 - 397
Target Start/End: Complemental strand, 48091611 - 48091407
Alignment:
Q  193 aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091611 aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataa 48091512  T
Q  293 ggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacgttgtgccactgtgc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48091511 ggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacgttgtgccactgtgc 48091412  T
Q  393 ctttg 397  Q
    |||||    
T  48091411 ctttg 48091407  T

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Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 48091782 - 48091602
Alignment:
Q  1 taaataaggcaacgttggttctgccccaagtgcttgacctgcaaaatcattgcatnnnnnnnnn-------ctatataagtttaatgttaatcacattat 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||    
T  48091782 taaataaggcaacgttggttctgccccaagtgcttgacctgcaaaatcattgcataaaaaaaaaaaaaaaactatataagtttaatgttaatcacattat 48091683  T
Q  94 tatgggggatataaattttgcatggttgctgagtgagggagaattaggtcgaagattcaatcttcactctcaacatagaaat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48091682 tatgggggatataaattttgcatggttgctgagtgagggagaattaggtcgaagattcaatcttcactctcaa-atagaaat 48091602  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 48074531 - 48074379
Alignment:
Q  217 actgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagta 316  Q
    |||||| | |||||| ||||||  |||||| ||||| ||||| ||||  |   |||||||||||||||||||||||||   || |||||| ||||||||     
T  48074531 actgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtg 48074432  T
Q  317 gttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaa 369  Q
    ||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||    
T  48074431 gttgctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaa 48074379  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 375
Target Start/End: Complemental strand, 1807383 - 1807235
Alignment:
Q  227 tcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagt 326  Q
    |||||||| ||| ||||||| || ||||| || || ||| ||||||||||||||||||| ||||||||||||| |||||| |||||||| ||    || |    
T  1807383 tcaggaatattgaagccatttgaaaaacgaccagttggtttacgagttggataatcaattccataaggaggagaatcagcacgagcagttgtaagcaaat 1807284  T
Q  327 aattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc 375  Q
    |||| || || |||||||||||||| ||||| ||||| ||||| |||||    
T  1807283 aattgttatttccattatcaacaagtgaatctccaaatacaaaaaaagc 1807235  T

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Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 375
Target Start/End: Complemental strand, 48100499 - 48100337
Alignment:
Q  213 cttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagc 312  Q
    |||||||||| |  |||||||| |||   ||||| ||||| || ||||| || ||||  || ||||||||||| ||||||||||||| |||||| | |||    
T  48100499 cttaactgataagatcaggaatattgagaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctagc 48100400  T
Q  313 agtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc 375  Q
    ||||||| | || ||||| ||||| ||| | |||||||| ||||||||||| |||||||||||    
T  48100399 agtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaagc 48100337  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 48083776 - 48083711
Alignment:
Q  226 gtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccata 291  Q
    |||||| || |||||||||||||||||||| || || || ||  || |||||||||||||||||||    
T  48083776 gtcagggatattgtagccattagagaaacgccctgtaggcctgtgacttggataatcaatgccata 48083711  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 372
Target Start/End: Original strand, 7388254 - 7388350
Alignment:
Q  276 gataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaa 372  Q
    |||||||||| |||||||| || |||||||| || |||||||| || |||||||| || || |||||||||||||| ||||| |||||||| |||||    
T  7388254 gataatcaataccataagggggtgcatcagcacgtgcagtagtagccaagtaattgttatttccattatcaacaagtgaatctccaaacactaagaa 7388350  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 378
Target Start/End: Original strand, 35355230 - 35355392
Alignment:
Q  216 aactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagt 315  Q
    ||||||| || ||||||| |||  ||||||| ||||||||||| ||||||  |||||||||| |||||||||||||||| |||  ||  ||||| || |     
T  35355230 aactgattaaatcaggaacgtttaagccattggagaaacgtccagtgggttgacgagttggaaaatcaatgccataaggtggataattggctcgcgccga 35355329  T
Q  316 agttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacg 378  Q
     || || ||  |||| || || |||||||||||||| || || |||||||| |||||||||||    
T  35355330 ggtagccaaaaaattgttattgccattatcaacaagtgagtctccaaacacgaagaaagcacg 35355392  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 29769753 - 29769856
Alignment:
Q  275 ggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaag 374  Q
    |||||||| ||||||||||||||||  || || || || || |||   || ||||||||||| ||| | |||||||| || |||||||| ||||||||||    
T  29769753 ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag 29769852  T
Q  375 cacg 378  Q
    ||||    
T  29769853 cacg 29769856  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 6343053 - 6343196
Alignment:
Q  226 gtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaag 325  Q
    |||||| ||||||  |||||| |||||||| || |  | |||| ||||| || ||||||| |||||||||   | |||||| ||||||||||| |||| |    
T  6343053 gtcaggcatgttgaggccattggagaaacgaccagaagctctatgagtttgagaatcaattccataaggatatgaatcagcacgagcagtagtggctagg 6343152  T
Q  326 taattattgttaccattatcaacaagagaatcaccaaacacaaa 369  Q
     | ||||| || |||||||| ||||||||||||||||| |||||    
T  6343153 aagttattatttccattatccacaagagaatcaccaaaaacaaa 6343196  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 12945917 - 12945955
Alignment:
Q  325 gtaattattgttaccattatcaacaagagaatcaccaaa 363  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  12945917 gtaattattgttaccattatcaagaagagaatctccaaa 12945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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