View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_42 (Length: 407)
Name: NF17651_low_42
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 54962126 - 54962320
Alignment:
| Q |
19 |
catccggaacatcagaggaatttcaaactttttccccaaaaacccaatgatttcaggtataaattcttattgccactaagttctcaatgagattgaacgg |
118 |
Q |
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| T |
54962126 |
catccggaacatcagaggaatttcaaactttttccccaaaaacccaatgatttcaggtataaattcttattgccactaagttctcaatgacattgaacgg |
54962225 |
T |
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| Q |
119 |
acattcttttacttgacatgaattaactattgctttaataagtccaccgaaactatttaggtttaaatatcattttagtccatacaaatatacta |
213 |
Q |
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| T |
54962226 |
acattcttttacttgacatgaattaactattgctttaataagtccaccgaaactatttaggtttaaatatcattttagtccatacaaatatacta |
54962320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 54962403 - 54962475
Alignment:
| Q |
324 |
atatttgaaaaaagattgtaaaccataaccgtgacacagttattttctctattacacgagcaatatatttcat |
396 |
Q |
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| T |
54962403 |
atatttgaaaaaagattgtaaaccataaccgtgacacagttattttctctattacacgagcagtatatttcat |
54962475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 31322250 - 31322163
Alignment:
| Q |
19 |
catccggaacatcagaggaatttcaaactttttccccaaaaacccaatgatttcaggtataaattcttattgccactaagttctcaat |
106 |
Q |
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| T |
31322250 |
catcctgaagatcaaaggaatttcaaactttggccccaaaaccccattgatttcaggtataaattcttatcgtcactaagttctcaat |
31322163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 31330688 - 31330605
Alignment:
| Q |
19 |
catccggaacatcagaggaatttcaaactttttccccaaaaacccaatgatttcaggtataaattcttattgccactaagttct |
102 |
Q |
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| T |
31330688 |
catcctgaagatcaaaggaatttcaaattttggcccctaaatcccattgatttcaggtataaattcttatcaccactaagttct |
31330605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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