View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_43 (Length: 405)
Name: NF17651_low_43
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 389
Target Start/End: Complemental strand, 54082835 - 54082430
Alignment:
| Q |
6 |
aatagattgagagcctttgatgaagcgagagagaccatcctagcgttacatgatgtgagtatgagtcccatgcttgtttggaagtttgttcacttccaag |
105 |
Q |
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| T |
54082835 |
aatagattgagagcctttgttgaagcgagagagacgatcctagcgttacatgatgtgagtgtgagtcccatgcttgtttggaagtttgttcactgccaag |
54082736 |
T |
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| Q |
106 |
tagagtgataacattctgatccatggatgagagaatgacatgaaaaacaagttgatcttgccttct-caatattaatagtctccatgagtttggctgaac |
204 |
Q |
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| T |
54082735 |
tagagtgataacattctgatccatggatgagagaatgacatgaaaaacaagttgatcttgccttctccaatattcatagtctccatgagtttggctggac |
54082636 |
T |
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| Q |
205 |
attgagattgagttgcggcatcaacaaatttgag-----------------gtgagcataaagacgaggagtgcattgaattgcacttcac------tga |
281 |
Q |
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| T |
54082635 |
attgagattgagttgcggcatcaacaaatttgagttgcggcatcaacaaatttgagcataaagacgaggagtgcatcgaattgcacttcacttatagtga |
54082536 |
T |
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| Q |
282 |
agnnnnnnnnnataggcaaatgttagttgttagagaggnnnnnnnnnntgttggccgaattgatcgaaccatggacctccttaaactctttcagtgccct |
381 |
Q |
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| T |
54082535 |
ag-ttttttttataggcaaatgttagttgttagagagg-aaaaaaaaatgttagccgaattgatcgaaccatggacctccttaaactatttcagtgccct |
54082438 |
T |
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| Q |
382 |
gacccttt |
389 |
Q |
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| T |
54082437 |
gacccttt |
54082430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 9008627 - 9008528
Alignment:
| Q |
70 |
gtcccatgcttgtttggaagtttgttcacttccaagtagagtgataacattctgatccatggatgagagaatgacatgaaaaacaagttgatcttgcctt |
169 |
Q |
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| T |
9008627 |
gtcccatgcttgtttggagttttttgcactaccaagcattgtgacaacattctgatccatggaggagagaatggcatgaagtatgagttgatcttgcctt |
9008528 |
T |
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