View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_46 (Length: 400)
Name: NF17651_low_46
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10473513 - 10473128
Alignment:
| Q |
1 |
aactagggtttaacaaaaattcaaagagcattatgtcgataatcaagtgattgggttcgagtggtcaatgaaatctcctagaacaaatcgtttaagagaa |
100 |
Q |
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| T |
10473513 |
aactagggtttaacataaattcaaagagcattatgtcaataattaagtgattgagttcaagtgcttaatgaaatctcctagaacaaatcgttcaagagaa |
10473414 |
T |
|
| Q |
101 |
ttcaaatttgattttcagatgaaaataactcttaatcagactttaattatctccaaaccaaactccatcaagaagtttaaaagagcattacaagtaagaa |
200 |
Q |
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| T |
10473413 |
ttcaaatttaattttcagatgaaaataactcttaatcagactttaattatctccaaaccaaactccatcaagaagtttaaaagagcattacaagtaagaa |
10473314 |
T |
|
| Q |
201 |
aaaagtggaaatgataaattgactatgtctgttcatgaggtagaagcaaggaattgttatatcattagtgtaaatatttcacttctttagatgtgcaagc |
300 |
Q |
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| T |
10473313 |
aaaagtggaaatgataaattgactatgtctgttcatgaggtagaagcaaggaattgttatatcattagtgtaaatatttcacctctttagatgtgcaagc |
10473214 |
T |
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| Q |
301 |
atcacacgactctatataattaaggcatggtttttacgtatattaaaatgcttgctacaataactaaatttctcttttataaattt |
386 |
Q |
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| T |
10473213 |
atcacacgactctatacgattaaggcatggtttttacgtatattaaaatgtttgctacaataactaaatttctcatttataaattt |
10473128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 10475821 - 10475688
Alignment:
| Q |
34 |
tgtcgataatcaagtgattgggttcgagtggtcaat-gaaatctcctagaacaaatcgtttaagagaattcaaatttgattttcagatgaaaataactct |
132 |
Q |
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| T |
10475821 |
tgtcaataatcaagtgattgggttcaagtggttaatagagatctcctagaacaaatcgttcaagaaaattcaaatttgattttcagataaaaataactct |
10475722 |
T |
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| Q |
133 |
taatcagactttaattatctccaaaccaaactcc |
166 |
Q |
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| T |
10475721 |
tagtcagactttaattatctccacaccaaactcc |
10475688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 10475621 - 10475554
Alignment:
| Q |
164 |
tccatcaagaagtttaaaagagcattacaagtaagaaaaaagtggaaatgataaattgactatgtctgt |
232 |
Q |
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| T |
10475621 |
tccatcaagaagtttaaaagagcataacaagtaaga-aaaagtggatatgataaattgactatgtctgt |
10475554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10476200 - 10476156
Alignment:
| Q |
1 |
aactagggtttaacaaaaattcaaagagcattatgtcgataatca |
45 |
Q |
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| T |
10476200 |
aactagggattaacaaaaattcaaagagcattatgtcaataatca |
10476156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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