View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_49 (Length: 394)
Name: NF17651_low_49
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 4805102 - 4805471
Alignment:
| Q |
18 |
ataagaagaaggttctgtgatgcaatttaacaaacagttgttattattatgaggaaatgttgaaagtgaaagtgttggaatccaagaagaaacaaagacc |
117 |
Q |
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| T |
4805102 |
ataagaagaaggttctgtgatgcaatttaacaaacagttgttattattatgaggaaatgttgaaagtggaagtgttggaatcctagaagaaacaaagacc |
4805201 |
T |
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| Q |
118 |
aaaagaatcaaatacaagtactcaaatcctgcaatgactgaggaaacttgaaagtgaaagggacaggatttagcatcaaatgctatatagattagacaat |
217 |
Q |
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| T |
4805202 |
aaaagaatcaaatacaagtactcaaatcctgcaatgactgaggaaacttgaaagtgaaagggacaggatttagcatcaaatgctatatagattagacaat |
4805301 |
T |
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| Q |
218 |
aaaaaccaatttcaccaattgggtagtaaccataaacaacaaaggtagtataaaaatctaacttttatagattacagacaacactataagctagaactag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4805302 |
aaaaaccaatttcaccaattgggtagtaaccataaacaacaaaggtagtataaaaatctaacttttatagattacagacaacactataagctagaactag |
4805401 |
T |
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| Q |
318 |
aaagagaaagaaactatagagagagaaagtgtgtattttgctttctttctttgcttacctgcctatgcta |
387 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4805402 |
aaagagagagaaaatatagagagagaaagtgtgtattttgctttctttctttgcttacctgcccatgcta |
4805471 |
T |
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