View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_50 (Length: 391)
Name: NF17651_low_50
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 9858323 - 9858618
Alignment:
| Q |
18 |
gttgtattcccagttgggttattcctagatcaggtcaaatgtcccacaatcttcgtaactctc--cttttattctatatattttctatttgcctnnnnnn |
115 |
Q |
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| T |
9858323 |
gttgtattttcagttgggttattcctggatc---tcagatgccccccaatcttcctaactctctccttttattttatatattttctatttgcctaaaaaa |
9858419 |
T |
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| Q |
116 |
nnnncagtggtgtgattaaattgtcttagcttgcagttttgattttttaactcagcaagtgatttaaatggcctagtggcaattcccacaaatcataagt |
215 |
Q |
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| T |
9858420 |
aaa-cagtagtgag--taaattgtcttagcttgcagttttgattttttaactcaggaagtgatttaaatggcctagtg-caactcccacaaatcgtaagt |
9858515 |
T |
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| Q |
216 |
acacatcgaagcacccgaaaggatgtagtcaact--tggttgaaattatagccaacactcttgaaggattaaatgcattttataaactctagttatgttc |
313 |
Q |
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| T |
9858516 |
acacatcgaagcacccgaaaggatgtagtcaactgttggttgaaattatagccaacactcttgaaggattaaatgcattttataaactctagttatgttc |
9858615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 384
Target Start/End: Original strand, 9858639 - 9858689
Alignment:
| Q |
334 |
ctctagttttgaattgatcaagtctctttgttttaagaattagagaattat |
384 |
Q |
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| T |
9858639 |
ctctaattttgaattgatcaaatctctttgctttaagaattagagaattat |
9858689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 5384033 - 5384071
Alignment:
| Q |
20 |
tgtattcccagttgggttattcctagatcaggtcaaatg |
58 |
Q |
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| T |
5384033 |
tgtattcccagttgggttattcctaggtcaggtgaaatg |
5384071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 38002327 - 38002413
Alignment:
| Q |
20 |
tgtattcccagttgggttattcctagatcaggtcaaatgtcccacaatcttcgtaactct--ccttttattctatatattttctattt |
105 |
Q |
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| T |
38002327 |
tgtattcccttttgggttactcctggatcaggtctaatgcccc-cagtctttgtatctctttccttttattttatatattttctattt |
38002413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 19758062 - 19758148
Alignment:
| Q |
20 |
tgtattcccagttgggttattcctagatcaggtcaaatgtcccacaatcttcgtaactc--tccttttattctatatattttctattt |
105 |
Q |
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| T |
19758062 |
tgtattctcagttgggttattcctgggtcagatcaaatg-cccccagtctttgtaactctttccttttattttatctatttcctattt |
19758148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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