View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_53 (Length: 388)
Name: NF17651_low_53
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 128 - 372
Target Start/End: Original strand, 39819029 - 39819257
Alignment:
| Q |
128 |
ggttaaaatgactgtatgatcactctatactatgatcataattcataaagtaaaaaatataatcaactatcaactgatcataacctctacgtactaactt |
227 |
Q |
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| T |
39819029 |
ggttaaaatgactgtatgatcactctatactatgatcataa-------agtaaaaaatataatcaactatgtac-------aacctctacgtactaactt |
39819114 |
T |
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| Q |
228 |
atctatctgaaacaatattcaactaattttaacaaatttaactctaagaacttatagctgcaaggtcc--ataattgattcttcacacttgatacataca |
325 |
Q |
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| T |
39819115 |
ttctatctgaaacaatattcaactaattttaacaaatttaaccctaagaacttatagctgcaaggtccatataattgattcttcacacttgatacatac- |
39819213 |
T |
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| Q |
326 |
tatatataactttaagataattcttcttaatgacaaagttataaact |
372 |
Q |
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| T |
39819214 |
---atataactttaagataattcttcttaatgacaaagttataaact |
39819257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 39818911 - 39818965
Alignment:
| Q |
11 |
agattatactgaaaataacgtctatgttaaaaagtttggtagatctaaaactccg |
65 |
Q |
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| T |
39818911 |
agattttacttaaaatagcgtctatgttaaaaattttggtagatctaaaactccg |
39818965 |
T |
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