View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_54 (Length: 387)
Name: NF17651_low_54
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 5328120 - 5328478
Alignment:
| Q |
12 |
aagaacaagaaggaaaaacctgccattagtttcctaggtagagacctcctaaaatcccataacttacaaggtgatgtgaggattgagaggaacataacca |
111 |
Q |
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| T |
5328120 |
aagaacaagaaggcaaaacctgccattagtttcctaggtagagacctcctaaaatcccataactcacaaggtgatgtgaggattgagaggaacataacca |
5328219 |
T |
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| Q |
112 |
ctgatgccaatgaacttgcaagtgccacaacatccatgaccatgaacactacaaatataggatgatggagtaaccttgggaagccgcggtcgtctgtgcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5328220 |
ctgatgccaatgaacttgcaagtgccacaacatccatgaccatgaacactacaaatataggatgatggagtaaccttgggaagccgtggtcgtctgtgcc |
5328319 |
T |
|
| Q |
212 |
tccagggacagtgtaagctgccgcaaagacaactgtcgcgacaaggacagctaccgctgaacatgactgggctgtcccttttatccattcacgagcatcc |
311 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328320 |
tcccgggacagtgtaagctgccgcaaagacaactgtcgcgacaagggcagctaccgcagaacatgactgggctgtcccttttatccattcacgagcatcc |
5328419 |
T |
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| Q |
312 |
ttcagaagttgttcgtgcttttgctcgaagagttcccttgcagtttggttgttgtcgtt |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328420 |
ttcagaagttgttcgtgcttttgctcgaagagttcccttgcagtttggttgttgtcgtt |
5328478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 5317491 - 5317137
Alignment:
| Q |
12 |
aagaacaagaaggaaaaacctgccattagtttcctaggtagagacctcctaaaatcccataacttacaaggtgatgtgaggattgagaggaacataacca |
111 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| | |
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| T |
5317491 |
aagaacaagaatgcgaaacctgccattagtttcctaggtagagacctcctaaaatcccacaactcacaaggtgatgtgaggattgagagaaacataacaa |
5317392 |
T |
|
| Q |
112 |
ctgatgccaatgaacttgcaagtgccacaacatccatgaccatgaacactacaaatataggatgatggagtaaccttgggaagccgcggtcgtctgtgcc |
211 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||| |||||| |||||||||||| |
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| T |
5317391 |
ctgaagccaatgaacttgcaagggccacaacatccatgactgtgaacactacgaatataggatgatgaagtaatcttggcaagccgtagtcgtctgtgcc |
5317292 |
T |
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| Q |
212 |
tccagggacagtgtaagctgccgcaaagacaactgtcgcgacaaggacagctaccgctgaacatgactgggctgtcccttttatccattcacgagcatcc |
311 |
Q |
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||| ||||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| |||||||| ||||||||| |
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| T |
5317291 |
tcctgggaccgtgtaagcagctgcaaagacaactgtcgcaacaaggacagctaccgcagaacatgactgagctgtctctttgatccattcgcgagcatcc |
5317192 |
T |
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| Q |
312 |
ttcagaagttgttcgtgcttttgctcgaagagttcccttgcagtttggttgttgt |
366 |
Q |
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||||| |||||||| || |||| ||||||||||||||| |||||||||||||||| |
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| T |
5317191 |
ttcagcagttgttcatgtttttcctcgaagagttccctagcagtttggttgttgt |
5317137 |
T |
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