View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_55 (Length: 384)
Name: NF17651_low_55
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 44113813 - 44114178
Alignment:
| Q |
1 |
cgcatgacattatcgcatatcaagaaaaagaagaagaaaagagtagtttacataccatgaaagtgtcacctatgttaatgactagggcttcaggtctagg |
100 |
Q |
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| T |
44113813 |
cgcatgatattattgcatatcaagaaaaagaagaagaaaagagtagtttacataccatgaaagtgtcacctatgttaatgactagggcttcaggtctagg |
44113912 |
T |
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| Q |
101 |
gcgaacagccacccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagta |
200 |
Q |
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| T |
44113913 |
gcgaacagccacccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagta |
44114012 |
T |
|
| Q |
201 |
ccaagtgtgagactagaacttttacaaggtggataatagttacatctcattattgagtcaccatcttcaaaaaatcttcgataatgcaaacgatctatcc |
300 |
Q |
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| T |
44114013 |
ccaagtgtgagattagaacttttacaaggtggataatagttacatctcattattgagtcaccatcttcaaaaaatcttcgataatgcaaacgatctatcc |
44114112 |
T |
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| Q |
301 |
ccaaactaatggccaagagctccataatcactaaagataattctttcattgcttcacagtactttt |
366 |
Q |
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| T |
44114113 |
ccaaactaatggccaagagctccataatcactaaagataattctttcattgcttcacagtactttt |
44114178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 40553866 - 40553830
Alignment:
| Q |
127 |
caaaaacttcaagacctccaacttgatcttgatgaag |
163 |
Q |
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| T |
40553866 |
caaaaacttgaagacctccaacttgatcttgatgaag |
40553830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 366
Target Start/End: Original strand, 39315114 - 39315436
Alignment:
| Q |
47 |
tttacataccatgaaagtgtcacctatgttaatgactagggcttcaggtctagggcgaacagccacccatttattatctgcaaaaacttcaagacctcca |
146 |
Q |
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||||| ||||||||| |||||||||||||| ||||| | || ||||| | ||| | ||||| | |||||| || || ||||||||||||||||||||| |
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| T |
39315114 |
tttacttaccatgaaggtgtcacctatgttgatgacaaaggtatcaggctttgggggcacagcaagccatttgttgtcagcaaaaacttcaagacctcca |
39315213 |
T |
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| Q |
147 |
acttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagtaccaagtg------tgagactagaacttttacaaggtggataatagt |
240 |
Q |
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| T |
39315214 |
acttgatcttgaaggagaatagtgatagagattgggtcacaatgagggccattgccaagagcaccagtgaggttagcactg---caaggtggataaaagt |
39315310 |
T |
|
| Q |
241 |
tacatctcattattgagtcaccatcttcaaaaaatcttcgataatgcaaacgatctatccccaaactaatggccaagagctccataatcactaaagataa |
340 |
Q |
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| T |
39315311 |
tgcatctcatcattgactcagcatcttcaaaaaatctttgataatgtttgcgatccacacccaaactaatggccaatagctccataatcacctcagttaa |
39315410 |
T |
|
| Q |
341 |
ttctttcattgcttcacagtactttt |
366 |
Q |
| |
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|| |||||||| ||| ||||||||| |
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| T |
39315411 |
atcattcattgcatcagagtactttt |
39315436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 39306188 - 39306280
Alignment:
| Q |
113 |
ccatttattatctgcaaaaacttcaagacctccaacttgatcttgatgaagaatggttagtgatgttgggtctgagtgagggccagtaccaag |
205 |
Q |
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|||||| ||||| ||||| |||| ||||||||||||||||||||| ||||||||| | ||| |||||||| | ||||| ||||| ||||| |
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| T |
39306188 |
ccatttgttatccacaaaagcttctagacctccaacttgatcttgaaaaagaatggtgactgaggttgggtcacaatgaggaccagtgccaag |
39306280 |
T |
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