View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_57 (Length: 383)
Name: NF17651_low_57
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 12119593 - 12119926
Alignment:
| Q |
19 |
cgtgaaccatccaaaaaaggatcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttcaactc |
118 |
Q |
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| T |
12119593 |
cgtgaaccatccaaaaaatgatcgttccacaccttgaacatgtttgtgaactatcatcaaaactacattttaatgttatgcttataaaacatttcaactc |
12119692 |
T |
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| Q |
119 |
agttgtagcctcgtgtataggggactttgacaaaatagaaaaacattacaatccttattggaacaacaccaaccggagtgcgaacaatcctacttcttcc |
218 |
Q |
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| T |
12119693 |
agttgtagcctcgtgtatgggggagtttgacaaaatagaaacacattaccatccttattggaacaacaccaaccggagtgcgaacaatcttacttcttcc |
12119792 |
T |
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| Q |
219 |
atgtacatgttatatgtactttgcactttatctttttctctgcgagtcatgtctttccctttctttttgcaggaaaaatgtcaagtctcgccttcagtaa |
318 |
Q |
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| T |
12119793 |
atgtacatgttatatgtactttgcactttatctttttctctgcgggtcatgtctttccctttctttttgcagaaaaaatgtcaagtctcgccttaagtaa |
12119892 |
T |
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| Q |
319 |
gtccaagaaggcacatgcccgtctagttccagag |
352 |
Q |
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| T |
12119893 |
gtccaagaaggcacatgcccgtctggttccagag |
12119926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 25830375 - 25830289
Alignment:
| Q |
20 |
gtgaaccatccaaaaaaggatcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaa |
106 |
Q |
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| T |
25830375 |
gtgaaccagcaaaagaagtattgttccacacccttaacatatttgtgaactatcaccaaacgtacattttaatgttatgtttataaa |
25830289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 19606991 - 19607058
Alignment:
| Q |
39 |
atcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaa |
106 |
Q |
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| T |
19606991 |
atcgttccataccctgaacatgtctcagaactatcatcaaatgtacattttaatgttatgcatataaa |
19607058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 45841686 - 45841780
Alignment:
| Q |
39 |
atcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttcaactcagttgtagcctcgtg |
133 |
Q |
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| T |
45841686 |
atcgttccacaccctcaccatatctgtaatctatcatcaaatgtacattttaattttatgcttataaagcacttcacctaagttttagcctcgtg |
45841780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 55229059 - 55228985
Alignment:
| Q |
40 |
tcgttccacaacctgaacatgtttgtgaactatcatcaaaattacattttaatgtcatgcttataaaacatttca |
114 |
Q |
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| T |
55229059 |
tcgttccacacgcttaacatatttgtgaactatcaccaaacgtgcattttaatgttatgcttgtaaaacacttca |
55228985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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