View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_6 (Length: 598)
Name: NF17651_low_6
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 14 - 581
Target Start/End: Original strand, 44251722 - 44252290
Alignment:
| Q |
14 |
cagagagtgcaaaggtcttgagacgaatcccgtcgtctccatctttgtttcaagggatgaagtcatccttcaagacaatcaagaaagcagtgaaactatg |
113 |
Q |
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| T |
44251722 |
cagagagtgcaagggtcttgagacgaattccgtcgtctccatctttgtttcaagggatgaagtcatccttcaagacaatcaagaaagcagtgaaactatg |
44251821 |
T |
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| Q |
114 |
aatgtttgcggcggcggctcttgtactttttattttcccttgttccttaacaatttgagtgatgctagttgaataagtgagtgaatatgtgtgcaaaaat |
213 |
Q |
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| T |
44251822 |
aatgtttgcggaggc---tcttgtactttttattttcccttgttccttaacaatttgagtgatgctagttgaataagtgagtgaatatgtgtgcaaaaat |
44251918 |
T |
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| Q |
214 |
atagg-cttgattctattgtttgatttgtgtataagattttttagttatcaaataagtataacagcttgttgttttagctgcaataattaggtttctgtt |
312 |
Q |
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| T |
44251919 |
atagggcttgattctattgtttgatttgtgtataagattttttagttatcaaataagtataacagcttgttgttttggctgcaataattaggtttctgtt |
44252018 |
T |
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| Q |
313 |
tcttctattttcatgttaagcacatagttttctactataaatttgagaattcttgcatctgctataataatttccttatttatcagaattacaagcagaa |
412 |
Q |
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| T |
44252019 |
tcttctattttcatgttaagcacatagttttctactataaatttgagaattcttgcatctgctataataatttccttatttatcagaattacaagcagaa |
44252118 |
T |
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| Q |
413 |
atgatctttggttgttctgatgtaaaaaagagtcttgtaatgtggat---ccataaagcacttgtaaataaatgaaaaacgttacacagtttatgacatt |
509 |
Q |
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| T |
44252119 |
atgatctttggttgttctgatgtaaaaaagagtcttgtaatgtggatccaccataaagcacttgtaaataaatgaaaaacgttacacagtttatgacatt |
44252218 |
T |
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| Q |
510 |
cctactcctagggtacttttcataccctctgaagatcaaacacaacaaacttttaaattaatagtactatgt |
581 |
Q |
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| T |
44252219 |
cctactcctagggtacttttcatacgctctgaagatcaaacacaacaaacttttaaattactagtactatgt |
44252290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 44263018 - 44263056
Alignment:
| Q |
39 |
aatcccgtcgtctccatctttgtttcaagggatgaagtc |
77 |
Q |
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| T |
44263018 |
aatcctgtcgtctccatatttgtttcaagggatgaagtc |
44263056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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