View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_61 (Length: 372)

Name: NF17651_low_61
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_61
NF17651_low_61
[»] chr7 (23 HSPs)
chr7 (64-363)||(40803044-40803340)
chr7 (18-63)||(1576327-1576372)
chr7 (235-322)||(3235542-3235628)
chr7 (18-65)||(27393068-27393115)
chr7 (199-317)||(46074043-46074161)
chr7 (27-64)||(10286921-10286958)
chr7 (27-63)||(323159-323195)
chr7 (199-317)||(12275728-12275844)
chr7 (20-66)||(32942176-32942222)
chr7 (244-317)||(12275817-12275889)
chr7 (244-317)||(49106984-49107056)
chr7 (239-307)||(2276275-2276342)
chr7 (195-306)||(10056622-10056733)
chr7 (258-317)||(26647783-26647841)
chr7 (20-63)||(29628050-29628093)
chr7 (235-317)||(5443518-5443599)
chr7 (235-317)||(5452563-5452644)
chr7 (20-58)||(8568651-8568689)
chr7 (30-63)||(36482230-36482263)
chr7 (26-63)||(42179339-42179376)
chr7 (243-313)||(40134464-40134531)
chr7 (20-60)||(40848796-40848836)
chr7 (243-322)||(47497778-47497856)
[»] chr5 (14 HSPs)
chr5 (199-317)||(3907644-3907760)
chr5 (18-63)||(40987823-40987868)
chr5 (217-317)||(42420068-42420168)
chr5 (237-317)||(22399758-22399837)
chr5 (25-64)||(1495444-1495483)
chr5 (199-314)||(25545211-25545324)
chr5 (235-317)||(41169460-41169541)
chr5 (20-63)||(27572142-27572185)
chr5 (215-317)||(40927655-40927757)
chr5 (25-63)||(41061733-41061771)
chr5 (25-66)||(27111156-27111197)
chr5 (244-317)||(36059286-36059358)
chr5 (30-66)||(15068400-15068436)
chr5 (26-66)||(42715724-42715764)
[»] chr2 (21 HSPs)
chr2 (189-317)||(42029365-42029493)
chr2 (18-64)||(16672491-16672537)
chr2 (235-317)||(33069155-33069236)
chr2 (188-322)||(9430159-9430293)
chr2 (236-317)||(6979068-6979147)
chr2 (27-64)||(18512065-18512102)
chr2 (236-317)||(35715044-35715124)
chr2 (235-312)||(37810139-37810215)
chr2 (235-272)||(42094235-42094272)
chr2 (200-303)||(33171633-33171736)
chr2 (202-317)||(40358686-40358801)
chr2 (25-60)||(21351880-21351915)
chr2 (238-305)||(42251236-42251302)
chr2 (235-277)||(44247608-44247650)
chr2 (237-317)||(12779490-12779568)
chr2 (20-65)||(15320676-15320721)
chr2 (236-305)||(25666798-25666866)
chr2 (256-317)||(42094293-42094353)
chr2 (258-306)||(41496058-41496105)
chr2 (27-63)||(44979873-44979909)
chr2 (234-302)||(45300437-45300503)
[»] chr8 (20 HSPs)
chr8 (191-317)||(27072840-27072966)
chr8 (18-64)||(31126837-31126883)
chr8 (18-63)||(1265589-1265634)
chr8 (18-63)||(6345780-6345825)
chr8 (18-63)||(37948522-37948567)
chr8 (18-63)||(43619617-43619662)
chr8 (235-305)||(40175893-40175963)
chr8 (235-317)||(2288669-2288750)
chr8 (27-63)||(4603114-4603150)
chr8 (27-63)||(32907424-32907460)
chr8 (20-63)||(12883827-12883870)
chr8 (26-63)||(8081845-8081882)
chr8 (25-64)||(4267856-4267895)
chr8 (244-317)||(8402557-8402627)
chr8 (219-277)||(21124977-21125036)
chr8 (20-63)||(40436378-40436421)
chr8 (235-296)||(34504386-34504446)
chr8 (244-317)||(40694692-40694764)
chr8 (217-302)||(8402483-8402566)
chr8 (27-63)||(10661096-10661132)
[»] chr4 (22 HSPs)
chr4 (18-64)||(9280408-9280454)
chr4 (18-64)||(24574734-24574780)
chr4 (237-318)||(21433860-21433940)
chr4 (235-322)||(15134637-15134723)
chr4 (217-317)||(16457971-16458070)
chr4 (27-63)||(47498424-47498460)
chr4 (25-63)||(34277450-34277488)
chr4 (26-64)||(42430494-42430532)
chr4 (27-63)||(46251517-46251553)
chr4 (20-63)||(32223416-32223459)
chr4 (148-272)||(32286212-32286338)
chr4 (20-63)||(36106517-36106560)
chr4 (25-60)||(42414129-42414164)
chr4 (256-314)||(33413994-33414051)
chr4 (217-317)||(45654001-45654099)
chr4 (20-62)||(48293502-48293544)
chr4 (256-322)||(52374900-52374965)
chr4 (239-305)||(52374991-52375056)
chr4 (195-322)||(3688599-3688727)
chr4 (27-64)||(40900187-40900224)
chr4 (244-317)||(45654090-45654162)
chr4 (31-63)||(35747777-35747809)
[»] chr3 (17 HSPs)
chr3 (18-64)||(37282224-37282270)
chr3 (235-322)||(36480690-36480776)
chr3 (157-305)||(29955025-29955177)
chr3 (157-305)||(30004179-30004331)
chr3 (17-64)||(19636122-19636169)
chr3 (27-63)||(32055434-32055470)
chr3 (26-61)||(39716828-39716863)
chr3 (192-317)||(14345139-14345264)
chr3 (200-305)||(40554072-40554177)
chr3 (199-270)||(48543416-48543488)
chr3 (222-272)||(40763400-40763451)
chr3 (244-306)||(3901572-3901633)
chr3 (244-298)||(29955045-29955098)
chr3 (244-298)||(30004199-30004252)
chr3 (235-317)||(35357305-35357386)
chr3 (217-314)||(13540227-13540327)
chr3 (27-63)||(48973317-48973353)
[»] chr6 (14 HSPs)
chr6 (18-63)||(7607860-7607905)
chr6 (18-63)||(16704942-16704987)
chr6 (20-64)||(30396050-30396094)
chr6 (259-317)||(4033086-4033143)
chr6 (235-317)||(12731542-12731623)
chr6 (30-64)||(21947197-21947231)
chr6 (245-317)||(5706699-5706770)
chr6 (261-317)||(31946914-31946969)
chr6 (27-66)||(35040314-35040353)
chr6 (255-317)||(1473603-1473664)
chr6 (30-64)||(16110715-16110749)
chr6 (192-317)||(479791-479915)
chr6 (195-247)||(3625146-3625198)
chr6 (199-306)||(24783899-24784006)
[»] chr1 (18 HSPs)
chr1 (18-63)||(5559873-5559918)
chr1 (157-270)||(5695665-5695780)
chr1 (235-317)||(7444351-7444432)
chr1 (235-309)||(31970116-31970189)
chr1 (18-63)||(14462185-14462230)
chr1 (163-271)||(49403465-49403578)
chr1 (199-317)||(34437631-34437748)
chr1 (20-63)||(40095518-40095561)
chr1 (235-277)||(40374064-40374106)
chr1 (217-314)||(45563117-45563214)
chr1 (239-317)||(49822602-49822679)
chr1 (199-277)||(939367-939446)
chr1 (20-63)||(36203540-36203583)
chr1 (26-60)||(22173373-22173407)
chr1 (238-272)||(38663724-38663758)
chr1 (244-317)||(21281465-21281538)
chr1 (27-63)||(16529604-16529640)
chr1 (234-302)||(40668998-40669065)
[»] scaffold0396 (1 HSPs)
scaffold0396 (25-64)||(842-881)
[»] scaffold0003 (1 HSPs)
scaffold0003 (217-277)||(136348-136409)
[»] scaffold0029 (1 HSPs)
scaffold0029 (27-64)||(40689-40726)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 1e-97; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 64 - 363
Target Start/End: Original strand, 40803044 - 40803340
Alignment:
Q  64 ggtgggggcaatcttcgtatgatacaattcaatgaaagcatttcttatgaccgttaaatgacaaactgcatatatttagttgaggaatactaacaacata 163  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| |    
T  40803044 ggtgggggcaatcttcgtatga--caattcaatgaaagcatttcttatgaccgttatatgacaaactgcgtatatttagttgaggaatactagcaacaca 40803141  T
Q  164 tattttaatacacattttttaacattattttattagttaaaattcatataagacccatcaaatcatgtgaacccatataaatttgatgggtcccatgtga 263  Q
    |||| ||| ||| ||||||||| ||||||||||||||||||||| |||| ||| ||| |||||||||   | |||||||| |||| ||| ||||||||||    
T  40803142 tattctaacacatattttttaatattattttattagttaaaatttatatgagatccaccaaatcatgcagatccatataagtttggtggatcccatgtga 40803241  T
Q  264 attttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtttttagttagtttatgtaaactaaaatatttatcaccctgcctttgc 363  Q
    ||||||||| || | ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  40803242 attttaaccaat-aaaaaatagtgttttaaaaagtgtatgttagaatgtgtgtttctagttagtttatgtaaactaaaatatttatcaccctacctttgc 40803340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1576327 - 1576372
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1576327 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 1576372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 3235628 - 3235542
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtttttag 322  Q
    ||||| ||||||||||||||| |||||||||||||||| |||| || | ||||| ||| ||||||||||||| |||||||||| ||||    
T  3235628 cccatgtaaatttgatgggtctcatgtgaattttaaccaatca-aagagagtgtattggaaagtgtgtgttaaaatgtgtgttgttag 3235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 27393068 - 27393115
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctagg 65  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  27393068 atttttaacctcaaaaccgatctaaaccggaccgcgaacacccctagg 27393115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 46074161 - 46074043
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaag 297  Q
    ||||||||||| || || |||||||||||| ||| | ||||||||||||| ||||||||||||| |||||||| |||| | || | ||||| || |||||    
T  46074161 gttaaaattcacatgagtcccatcaaatcacgtggatcccatataaatttaatgggtcccatgtaaattttaatcgatta-aagaaagtgtgttaaaaag 46074063  T
Q  298 tgtgtgttagaatgtgtgtt 317  Q
    ||||| ||| ||||| ||||    
T  46074062 tgtgtattaaaatgtttgtt 46074043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 10286921 - 10286958
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10286921 ctcaaaaccgatccaaaccggaccgcgaacacccctag 10286958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 323195 - 323159
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  323195 ctcaaaaccgatccaaaccggaccgcgaacaccccta 323159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 12275844 - 12275728
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaag 297  Q
    ||||||||||||||  | |||| |||||||||||   |||||||||||||| |||||||||||||| |||||||| ||  ||| | ||||| ||| |||     
T  12275844 gttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgatttttaaccaat-tgaagagagtgtgttggaaa- 12275747  T
Q  298 tgtgtgttagaatgtgtgtt 317  Q
     |||||||||||||||||||    
T  12275746 -gtgtgttagaatgtgtgtt 12275728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 32942176 - 32942222
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacacccctaggt 66  Q
    |||||||||||||||||| |||||| | |||||||||||||||||||    
T  32942176 ttttaacctcaaaaccgaaccaaactgcaccgcgaacacccctaggt 32942222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 12275817 - 12275889
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||| ||||| |||||||||||| ||| ||| | ||||| ||| ||||||||||||||||||||||||    
T  12275817 atttggtgggacccatatgaattttaaccaatc-gaagagagtgtgttggaaagtgtgtgttagaatgtgtgtt 12275889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 49106984 - 49107056
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||| || ||||||||||||||| |||| || | ||||| ||||||||||||||||||||||| ||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatca-aagagagtgtgttgaaaagtgtgtgttagaatgtatgtt 49107056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 2276342 - 2276275
Alignment:
Q  239 tataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttag 307  Q
    |||||||||| ||||  ||||||||||||||||| |||| || | ||||| ||||||||||||||||||    
T  2276342 tataaatttggtgggatccatgtgaattttaaccaatca-aagagagtgtgttgaaaagtgtgtgttag 2276275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 306
Target Start/End: Complemental strand, 10056733 - 10056622
Alignment:
Q  195 attagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttga 293  Q
    |||||||||||| |||||  | |||  |||||||||||   |||||||||| ||| ||||| ||||||||||||| ||| |||| |||| ||||| ||||    
T  10056733 attagttaaaatccatatgggtccctccaaatcatgtgggtcccatataaaattggtgggttccatgtgaattttgaccaatca-aaaagagtgtgttga 10056635  T
Q  294 aaagtgtgtgtta 306  Q
    ||||| |||||||    
T  10056634 aaagtatgtgtta 10056622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 26647783 - 26647841
Alignment:
Q  258 atgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||| ||||| |||| |||||||||| ||||||||||||| ||||||||| ||||    
T  26647783 atgtgaattctaaccaatca-aaaatagtgtgttgaaaagtgtgtattagaatgtatgtt 26647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 29628093 - 29628050
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||| ||||||||||||| |||||||| ||||||||||||||||    
T  29628093 ttttcacctcaaaaccgaaccaaaccgcaccgcgaacaccccta 29628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 5443599 - 5443518
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||| |||  ||||||| ||||||||| |||||| ||| || | | ||| ||||||||||||||||||||||| ||||    
T  5443599 cccatataacttttgtgggtcctatgtgaattctaaccggtca-aacagaatgtgttgaaaagtgtgtgttagaatgtatgtt 5443518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 5452644 - 5452563
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||| |||  ||||||| ||||||||| |||||| ||| || | | ||| ||||||||||||||||||||||| ||||    
T  5452644 cccatataacttttgtgggtcctatgtgaattctaaccggtca-aacagaatgtgttgaaaagtgtgtgttagaatgtatgtt 5452563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 8568651 - 8568689
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacac 58  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  8568651 ttttaacctcaaaaccgaaccaaaccgcaccgcgaacac 8568689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 36482263 - 36482230
Alignment:
Q  30 aaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||| |||||||||||||||||    
T  36482263 aaaaccgatccaaaccagaccgcgaacaccccta 36482230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 42179376 - 42179339
Alignment:
Q  26 cctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  42179376 cctcaaaaccgatccaaaccaaaccgcgaacaccccta 42179339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 40134464 - 40134531
Alignment:
Q  243 aatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtg 313  Q
    |||||| |||| |||||||||||||||||| |||||   | ||||| ||| ||||||||||||| ||||||    
T  40134464 aatttggtgggacccatgtgaattttaaccaatcag---agagtgtgttggaaagtgtgtgttaaaatgtg 40134531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 40848836 - 40848796
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccc 60  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  40848836 ttttaccctcaaaaccgaaccaaaccgcaccgcgaacaccc 40848796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 47497778 - 47497856
Alignment:
Q  243 aatttgatgggtcccatgtgaattttaaccgatca--gaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtttttag 322  Q
    |||||| |||| | |||||||||||||||| ||||  |||||||   | ||||||| |||||||||||||||||||| ||||    
T  47497778 aatttggtgggactcatgtgaattttaaccaatcaaagaaaata---tattgaaaaatgtgtgttagaatgtgtgttgttag 47497856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 317
Target Start/End: Complemental strand, 3907760 - 3907644
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaag 297  Q
    ||||||||||| ||  | |||| |||||||||||   |||||||||||||| ||||||||||||||||||||||| |||   ||| ||||| ||||||||    
T  3907760 gttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatc---aaagagtgtgttgaaaag 3907664  T
Q  298 tgtgtgttagaatgtgtgtt 317  Q
    ||| ||||||||||||||||    
T  3907663 tgtttgttagaatgtgtgtt 3907644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 40987823 - 40987868
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40987823 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 40987868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 42420068 - 42420168
Alignment:
Q  217 cccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtg 315  Q
    |||| ||||||||||| | |||||||||||||||||| || ||||||| |||||||| |||| || | ||||| |||||||| |||| ||||||||||||    
T  42420068 cccaccaaatcatgtggatcccatataaatttgatggatctcatgtgagttttaaccaatca-aatagagtgtgttgaaaagcgtgttttagaatgtgtg 42420166  T
Q  316 tt 317  Q
    ||    
T  42420167 tt 42420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 22399837 - 22399758
Alignment:
Q  237 catataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||||| |||||| ||||||||||||| || |||| |||| ||||| |||||||||| || ||||||||||||||    
T  22399837 catatgaatttggtgggtctcatgtgaattttatccaatca-aaaagagtgtgttgaaaagtgagtattagaatgtgtgtt 22399758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 1495483 - 1495444
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  1495483 acctcaaaactgatccaaaccggaccgcgaacacccctag 1495444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 25545324 - 25545211
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgt-gaacccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaag 297  Q
    |||||||||||  | || |||| |||||||||| |  |||||||||||||  |||||| |||||||||||||||| |||   ||| ||||| |||||||     
T  25545324 gttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaatc---aaagagtgtgttgaaaaa 25545228  T
Q  298 tgtgtgttagaatgtgt 314  Q
    ||||||||| |||||||    
T  25545227 tgtgtgttaaaatgtgt 25545211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 41169460 - 41169541
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||| ||| || ||||||||||||||| ||||| || | ||||| ||||||| ||||||||| ||| ||||||    
T  41169460 cccatataaatttggtggatcacatgtgaattttaacggatca-aagagagtgtgttgaaaaatgtgtgttaaaatatgtgtt 41169541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 27572142 - 27572185
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||| |||||||| ||||| ||||||||||    
T  27572142 ttttaacctcaaaaccgaaccaaaccgcaccgcaaacaccccta 27572185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 40927655 - 40927757
Alignment:
Q  215 gacccatcaaatcatgtgaac-ccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtg 313  Q
    ||||||||||||||||||    |||| |||| ||| ||||||||||||||||||| ||| |||| || ||||| | ||||||| | ||||||| ||||||    
T  40927655 gacccatcaaatcatgtgggttccatgtaaaattggtgggtcccatgtgaattttgaccaatca-aagatagtttgttgaaaaatttgtgttataatgtg 40927753  T
Q  314 tgtt 317  Q
    ||||    
T  40927754 tgtt 40927757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 41061733 - 41061771
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  41061733 accttaaaaccgatccaaaccgcaccgcgaacaccccta 41061771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 27111156 - 27111197
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacacccctaggt 66  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  27111156 acctcaaaactgatccaaaccgcaccgcaaacacccctaggt 27111197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 36059286 - 36059358
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||  |||||| |||||||||| |||| | || ||||| ||| ||||| ||||||||||||||||||    
T  36059286 atttgatgggatccatgtaaattttaaccaatcaaataa-agtgtgttggaaagtatgtgttagaatgtgtgtt 36059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 15068436 - 15068400
Alignment:
Q  30 aaaaccgatccaaaccggaccgcgaacacccctaggt 66  Q
    |||||||| |||||||| |||||||||||||||||||    
T  15068436 aaaaccgaaccaaaccgcaccgcgaacacccctaggt 15068400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 42715764 - 42715724
Alignment:
Q  26 cctcaaaaccgatccaaaccggaccgcgaacacccctaggt 66  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  42715764 cctcaaaaccgatccaaaccggaccgcaaactcccataggt 42715724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 42029365 - 42029493
Alignment:
Q  189 tattttattagttaaaattcatataagacccatcaaatcatgtgaaccc-atataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtg 287  Q
    ||||| ||| ||||||||||||||  | || | ||||||||| | |||| ||||||||||| |||||| |||||||||||||||| || | |||| ||||    
T  42029365 tatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaattttaaccaat-aaaaaaaagtg 42029463  T
Q  288 ttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    | |||||||||||||||||||||| |||||    
T  42029464 tgttgaaaagtgtgtgttagaatgcgtgtt 42029493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 16672491 - 16672537
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  16672491 atttttaacctcaaaaccgatccaaaccggaccgcaaacacccctag 16672537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 33069236 - 33069155
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||| ||| ||||||  |||||||||||||||||||| || | ||||| |||||||||||||| |||||||||||||    
T  33069236 cccatataaacttggtgggtctaatgtgaattttaaccgatca-aagaaagtgtgttgaaaagtgtgtgatagaatgtgtgtt 33069155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 322
Target Start/End: Original strand, 9430159 - 9430293
Alignment:
Q  188 ttattttattagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagt 286  Q
    |||||| ||||||||||||| |||||   || | |||||||||||   |||||| ||||||||||||   |||||||||||||||| |||| || | | |    
T  9430159 ttatttgattagttaaaatttatatagatcctaccaaatcatgtgggtcccatacaaatttgatggggttcatgtgaattttaaccaatca-aatagaat 9430257  T
Q  287 gttttgaaaagtgtgtgttagaatgtgtgtttttag 322  Q
     | |||||||||||||||||||||||||||| ||||    
T  9430258 atgttgaaaagtgtgtgttagaatgtgtgttattag 9430293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 6979068 - 6979147
Alignment:
Q  236 ccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||||||||||||| |||| |||||||||| ||   |||| | ||| ||||||||||||||||| ||||||||||    
T  6979068 ccatataaatttgatgggtccaatgtaaattttaaccaat--aaaaaaaatgtgttgaaaagtgtgtgttaaaatgtgtgtt 6979147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 18512065 - 18512102
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18512065 ctcaaaaccgatccaaaccggaccgcgaacacccctag 18512102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 35715044 - 35715124
Alignment:
Q  236 ccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||| ||||||||| || |||| |||||||||| |||| || | ||||| ||||||||||||| ||| ||||||||||    
T  35715044 ccatataactttgatgggacctatgtaaattttaaccaatca-aagagagtgtattgaaaagtgtgtcttaaaatgtgtgtt 35715124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 37810215 - 37810139
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgt 312  Q
    |||||||||||||| ||||||||||||||||| ||||| |||| || | ||||| ||||||||| || |||| |||||    
T  37810215 cccatataaatttggtgggtcccatgtgaattataaccaatca-aagagagtgtgttgaaaagtatgagttaaaatgt 37810139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 42094272 - 42094235
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaacc 272  Q
    |||||||||||||| |||||||||||||||||||||||    
T  42094272 cccatataaatttggtgggtcccatgtgaattttaacc 42094235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 33171633 - 33171736
Alignment:
Q  200 ttaaaattcatataagacccatcaaatcatgtga-acccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagt 298  Q
    |||||||||||||  | |||| |||||||||| | |||  |||||||||| |||| |||||||||| ||||||| |||| || | ||||| |||||||||    
T  33171633 ttaaaattcatatgggtcccaccaaatcatgtaagacctgtataaatttggtgggacccatgtgaaatttaaccaatca-aagagagtgtgttgaaaagt 33171731  T
Q  299 gtgtg 303  Q
    |||||    
T  33171732 gtgtg 33171736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 317
Target Start/End: Original strand, 40358686 - 40358801
Alignment:
Q  202 aaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgt 300  Q
    |||||||| || || |||||||||| ||||||  ||||| | |||||| |||||||||||| |||||||||| || | ||||||| || ||||||| | |    
T  40358686 aaaattcacatgagtcccatcaaattatgtgagtcccatgttaatttggtgggtcccatgtaaattttaacctat-aaaaaatagggtgttgaaaattat 40358784  T
Q  301 gtgttagaatgtgtgtt 317  Q
    |||||| ||| ||||||    
T  40358785 gtgttaaaatttgtgtt 40358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 21351915 - 21351880
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacaccc 60  Q
    |||||||||||||||||||||| |||||||||||||    
T  21351915 acctcaaaaccgatccaaaccgcaccgcgaacaccc 21351880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 42251236 - 42251302
Alignment:
Q  238 atataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtt 305  Q
    ||||||||||| ||| ||||||||||||||||| | |||| || | ||||| ||||||||||||||||    
T  42251236 atataaatttggtggatcccatgtgaattttaatcaatca-aagagagtgtgttgaaaagtgtgtgtt 42251302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 44247608 - 44247650
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatca 277  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||    
T  44247608 cccatacaaatttgatggatcccatgtgaattttaaccaatca 44247650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 12779568 - 12779490
Alignment:
Q  237 catataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||||| ||| ||||||||||||||||||| |||  |||| | ||| ||||||| ||| |||||||| |||||||    
T  12779568 catatgaatttggtggatcccatgtgaattttaaccaatc--aaaagaatgtgttgaaaaatgtatgttagaaggtgtgtt 12779490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 15320676 - 15320721
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacacccctagg 65  Q
    ||||| |||||||| ||| |||||||| ||||||||||||||||||    
T  15320676 ttttagcctcaaaatcgaaccaaaccgcaccgcgaacacccctagg 15320721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 25666866 - 25666798
Alignment:
Q  236 ccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtt 305  Q
    ||||||||||||| |||||| |||||||||||||| | |||| || | ||||| ||||||| ||||||||    
T  25666866 ccatataaatttggtgggtctcatgtgaattttaatcaatca-aatagagtgtgttgaaaaatgtgtgtt 25666798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 42094293 - 42094353
Alignment:
Q  256 ccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||||||||| |||| | | | |||| ||||||||||||||||| ||||||||||    
T  42094293 ccatgtgaattttaaccaatcaaagagt-gtgtgttgaaaagtgtgtgttaaaatgtgtgtt 42094353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 41496105 - 41496058
Alignment:
Q  258 atgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtta 306  Q
    ||||||||||||||| |||| || ||||||| |||||||||||||||||    
T  41496105 atgtgaattttaaccaatca-aagatagtgtattgaaaagtgtgtgtta 41496058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 44979873 - 44979909
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  44979873 ctcaaaaccgaaccaaaccgcaccgcgaacaccccta 44979909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 45300437 - 45300503
Alignment:
Q  234 acccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgt 302  Q
    |||||||||| ||||||||   ||||||||||||||||| |||| |||| ||||| |||||||||||||    
T  45300437 acccatataa-tttgatggaatccatgtgaattttaaccaatca-aaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 317
Target Start/End: Original strand, 27072840 - 27072966
Alignment:
Q  191 ttttattagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgtt 289  Q
    ||||||| |||||||||||| || | | || ||||||||||| | |||||||||||||| ||||||| |||| |||||||||| |||| |||| | |||     
T  27072840 ttttattggttaaaattcatgtaggtctcaccaaatcatgtggatcccatataaatttggtgggtccaatgtaaattttaaccaatca-aaaagaatgtg 27072938  T
Q  290 ttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||||||||| ||| ||||||    
T  27072939 ttgaaaagtgtgtgttaaaatatgtgtt 27072966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 31126883 - 31126837
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31126883 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 31126837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1265589 - 1265634
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1265589 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 1265634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 6345780 - 6345825
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  6345780 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 6345825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 37948567 - 37948522
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  37948567 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 37948522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 43619662 - 43619617
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43619662 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 43619617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 40175963 - 40175893
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtt 305  Q
    |||||||||||||| ||| ||||||||||||||||||| || | |||| ||||| ||||||||||||||||    
T  40175963 cccatataaatttggtggatcccatgtgaattttaaccaataaaaaaaaagtgtgttgaaaagtgtgtgtt 40175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 2288669 - 2288750
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||||||| ||||||||||||||||||| |||| || | ||  | ||||||||||| | ||||||||||||||    
T  2288669 cccatataaatttgatggatcccatgtgaattttaaccaatca-aagagagattgttgaaaagtgtcttttagaatgtgtgtt 2288750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 4603114 - 4603150
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  4603114 ctcaaaaccgatccaaaccggaccgcgaacaccccta 4603150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 32907424 - 32907460
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  32907424 ctcaaaaccgatccaaaccggaccgcgaacaccccta 32907460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 12883827 - 12883870
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  12883827 ttttaacctcaaaaccgaaccaaaccgcaccgcgaacaccccta 12883870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 8081845 - 8081882
Alignment:
Q  26 cctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  8081845 cctcaaaactgatccaaaccggaccgcgaacaccccta 8081882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 4267856 - 4267895
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||| |||||||||||| |||||||||||||||||    
T  4267856 acctcaaaatcgatccaaaccgcaccgcgaacacccctag 4267895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 8402557 - 8402627
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||| |||||| || |||||||| ||||   |||||||| ||||||||||||||||| ||||||||||    
T  8402557 atttggtggggcccatgagagttttaaccaatca---aatagtgtgttgaaaagtgtgtgttaaaatgtgtgtt 8402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 21125036 - 21124977
Alignment:
Q  219 catcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatca 277  Q
    |||||||||||||| | |||||||||||||||||| | |||| |||||||||||| ||||    
T  21125036 catcaaatcatgtggatcccatataaatttgatggattccatatgaattttaaccaatca 21124977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 40436421 - 40436378
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||    
T  40436421 ttttaccctcaaaaccgaaccaaaccgcaccgcgaacaccccta 40436378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 34504446 - 34504386
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaa 296  Q
    |||||||||||||| || || ||||||||||||||||| |||| |||| ||||| |||||||    
T  34504446 cccatataaatttggtgagttccatgtgaattttaaccaatca-aaaagagtgtgttgaaaa 34504386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 40694692 - 40694764
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||| |||||||||||||||||  || | |||| ||||| ||||||||||||||||| || |||||||    
T  40694692 atttggtgggacccatgtgaattttaactaataa-aaaagagtgtattgaaaagtgtgtgttaaaacgtgtgtt 40694764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 8402566 - 8402483
Alignment:
Q  217 cccatcaaatcatgtga-acccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgt 302  Q
    |||| |||||||||||  |||||||| |||||| |||| |||||||||||||||| | |||   ||| ||||| |||||||||||||    
T  8402566 cccaccaaatcatgtgggacccatattaatttgttgggacccatgtgaattttaaacaatc---aaagagtgtgttgaaaagtgtgt 8402483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 10661132 - 10661096
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  10661132 ctcaaaaccgaaccaaaccgcaccgcgaacaccccta 10661096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 9280408 - 9280454
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9280408 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 9280454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 24574780 - 24574734
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24574780 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 24574734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 21433940 - 21433860
Alignment:
Q  237 catataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgttt 318  Q
    |||||||||||| |||||| |||||||||||||||| |||| || | ||||| ||||||| ||||||||| |||||||||||    
T  21433940 catataaatttggtgggtctcatgtgaattttaaccaatca-aagagagtgtgttgaaaaatgtgtgttaaaatgtgtgttt 21433860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 322
Target Start/End: Original strand, 15134637 - 15134723
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtttttag 322  Q
    |||||||||||||| || |||||||||||||||||||| ||||  | | ||||| |||||||||||| |||| |||||||||| ||||    
T  15134637 cccatataaatttggtgagtcccatgtgaattttaaccaatca-cagacagtgtgttgaaaagtgtgcgttaaaatgtgtgttgttag 15134723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 16457971 - 16458070
Alignment:
Q  217 cccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtg 315  Q
    ||||||||||||||||   |||||||||||||| |||||| ||  ||||||| || |||||| || | ||||| ||||||||||||||||||||||||||    
T  16457971 cccatcaaatcatgtgggtcccatataaatttggtgggtctcacatgaattt-aatcgatca-aagagagtgtgttgaaaagtgtgtgttagaatgtgtg 16458068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 47498460 - 47498424
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  47498460 ctcaaaaccgatccaaaccggaccgcgaacaccccta 47498424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 34277450 - 34277488
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  34277450 acctcaaaaccgatccaaaccgcaccgcgaacaccccta 34277488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 42430494 - 42430532
Alignment:
Q  26 cctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  42430494 cctcaaaaccgatccaaaccgcaccgcgaacacccctag 42430532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 46251553 - 46251517
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||| |||||||||||    
T  46251553 ctcaaaaccgatccaaaccggaccgtgaacaccccta 46251517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 32223416 - 32223459
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||    
T  32223416 ttttaacctcaaaaccgaatcaaaccgcaccgcgaacaccccta 32223459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 272
Target Start/End: Original strand, 32286212 - 32286338
Alignment:
Q  148 gaatactaacaacatatattttaatacacattttttaacattatttt--attagttaaaattcatataagacccatcaaatcatgtgaacccatataaat 245  Q
    |||| ||||||||| ||||||||| | |||||||| |||| | || |  |||  |||||||||| || || |||| ||||||||||| | | ||||||||    
T  32286212 gaatgctaacaacaaatattttaagatacatttttcaacactcttattgattctttaaaattcacatgagtcccaccaaatcatgtggatcaatataaat 32286311  T
Q  246 ttgatgggtcccatgtgaattttaacc 272  Q
    ||| | ||  |||||||||||||||||    
T  32286312 ttggttggatccatgtgaattttaacc 32286338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36106517 - 36106560
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||| |||||||| |||||||||| |||||    
T  36106517 ttttaacctcaaaaccgaaccaaaccgcaccgcgaacatcccta 36106560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 42414164 - 42414129
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacaccc 60  Q
    |||||||||||||||||||||| |||||||||||||    
T  42414164 acctcaaaaccgatccaaaccgcaccgcgaacaccc 42414129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 33414051 - 33413994
Alignment:
Q  256 ccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgt 314  Q
    ||||||||||||||||| |||| || | ||||| ||||||||||||||||| |||||||    
T  33414051 ccatgtgaattttaaccaatca-aagagagtgtgttgaaaagtgtgtgttacaatgtgt 33413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 45654099 - 45654001
Alignment:
Q  217 cccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtg 315  Q
    ||||||||||||||||   |||||||||||||||| |||| ||| | ||||| |||| ||||  ||| ||||| ||||||||||| |||||| |||||||    
T  45654099 cccatcaaatcatgtgggtcccatataaatttgataggtctcatataaattt-aaccaatca--aaagagtgtgttgaaaagtgtctgttaggatgtgtg 45654003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 48293502 - 48293544
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacacccct 62  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  48293502 ttttaacctcaaaaccgaaccaaactgcaccgcgaacacccct 48293544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 322
Target Start/End: Complemental strand, 52374965 - 52374900
Alignment:
Q  256 ccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtttttag 322  Q
    ||||||||||||||| | |||| || | ||||| ||||||||||||||||| |||||||||| ||||    
T  52374965 ccatgtgaattttaatctatca-aagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttag 52374900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 52374991 - 52375056
Alignment:
Q  239 tataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtt 305  Q
    |||||||||||||| ||  ||||||||||||||| |||| |||| ||||| ||||||| ||||||||    
T  52374991 tataaatttgatggatcaaatgtgaattttaaccaatca-aaaagagtgtattgaaaaatgtgtgtt 52375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 322
Target Start/End: Original strand, 3688599 - 3688727
Alignment:
Q  195 attagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaattt-gatgggtcccatgtgaattttaaccgatcagaaaatagtgttttg 292  Q
    ||||||||||||||| ||  | | || |||||||||||   ||||||||| ||| |||||||| |||||||||||||||| |||| || | ||||| |||    
T  3688599 attagttaaaattcacatgggtctcaccaaatcatgtgggtcccatataattttagatgggtcacatgtgaattttaaccaatca-aagaaagtgtgttg 3688697  T
Q  293 aaaagtgtgtgttagaatgtgtgtttttag 322  Q
     ||||||| | ||| |||||||||| ||||    
T  3688698 gaaagtgtatattaaaatgtgtgttgttag 3688727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 40900187 - 40900224
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  40900187 ctcaaaaccgaaccaaaccgcaccgcgaacacccctag 40900224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 45654090 - 45654162
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||  ||||||||||||||||| |||| |||| ||||| || |||| | ||||||||||||| ||||    
T  45654090 atttgatgggatccatgtgaattttaaccaatca-aaaaaagtgtgttaaaaaatatgtgttagaatgtatgtt 45654162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 35747777 - 35747809
Alignment:
Q  31 aaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||| ||||||||||    
T  35747777 aaaccgatccaaaccggaccgcaaacaccccta 35747809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 37282270 - 37282224
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37282270 atttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 37282224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 235 - 322
Target Start/End: Complemental strand, 36480776 - 36480690
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtttttag 322  Q
    |||||||||||||| ||||||||||||||||||||||| |||| || | ||||| ||| |||| |||||||| |||||||||| ||||    
T  36480776 cccatataaatttgttgggtcccatgtgaattttaaccaatca-aagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttag 36480690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 305
Target Start/End: Original strand, 29955025 - 29955177
Alignment:
Q  157 caacatatattttaatacacattttttaaca----ttattttattagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatg 251  Q
    ||||||||||||||||||| | |||| ||||    || ||| ||| ||||||||||| ||  | ||||||||||||||||   |||| ||||||||||||    
T  29955025 caacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatg 29955124  T
Q  252 ggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtt 305  Q
    | |||||| |||||||||||  |||| | || ||||| ||||||||||||||||    
T  29955125 gatcccatatgaattttaactaatca-agaagagtgtattgaaaagtgtgtgtt 29955177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 305
Target Start/End: Original strand, 30004179 - 30004331
Alignment:
Q  157 caacatatattttaatacacattttttaaca----ttattttattagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatg 251  Q
    ||||||||||||||||||| | |||| ||||    || ||| ||| ||||||||||| ||  | ||||||||||||||||   |||| ||||||||||||    
T  30004179 caacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatg 30004278  T
Q  252 ggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtt 305  Q
    | |||||| |||||||||||  |||| | || ||||| ||||||||||||||||    
T  30004279 gatcccatatgaattttaactaatca-agaagagtgtattgaaaagtgtgtgtt 30004331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 19636169 - 19636122
Alignment:
Q  17 aatttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19636169 aattttttacctcaaaaccgatccaaatcggaccgcgaacacccctag 19636122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 32055470 - 32055434
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||||||||||||||||||    
T  32055470 ctcaaaaccgatccaaaccggaccgcgaacaccccta 32055434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 39716863 - 39716828
Alignment:
Q  26 cctcaaaaccgatccaaaccggaccgcgaacacccc 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  39716863 cctcaaaaccgatccaaaccggaccgcgaacacccc 39716828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 14345264 - 14345139
Alignment:
Q  192 tttattagttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttt 290  Q
    |||||| ||||||||||| || |  |||| |||||||||||   |||||||||||||| |||||| |||||| ||||||||| |||| || | ||||| |    
T  14345264 tttattcgttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatca-aagaaagtgtgt 14345166  T
Q  291 tgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||| | ||||||| ||| ||||||    
T  14345165 tgaaaaatatgtgttaaaatatgtgtt 14345139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 40554072 - 40554177
Alignment:
Q  200 ttaaaattcatataagacccatcaaatcatgtga-acccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagt 298  Q
    |||||||||| ||  | |||| |||||||||||| |||||||||||||||||||  | ||||||| |||||||| |||| || | ||||| ||||||| |    
T  40554072 ttaaaattcacatgggtcccaccaaatcatgtgagacccatataaatttgatggaactcatgtgagttttaaccaatca-aagagagtgtattgaaaatt 40554170  T
Q  299 gtgtgtt 305  Q
    |||||||    
T  40554171 gtgtgtt 40554177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 48543488 - 48543416
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaa 270  Q
    ||||||||||| || || | |||||||||| ||| | ||||||||||||| ||||||||||||| ||||||||    
T  48543488 gttaaaattcacatgagtctcatcaaatcacgtggatcccatataaatttaatgggtcccatgtaaattttaa 48543416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 40763451 - 40763400
Alignment:
Q  222 caaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaacc 272  Q
    ||||||||||| | |||||||||||||||||| || ||||||||||||||||    
T  40763451 caaatcatgtggatcccatataaatttgatggatctcatgtgaattttaacc 40763400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 3901572 - 3901633
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgtta 306  Q
    ||||| |||| |||||||||||||||||| |||| || | ||||| |||||||||||||||||    
T  3901572 atttggtgggacccatgtgaattttaaccaatca-aagagagtgtgttgaaaagtgtgtgtta 3901633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 29955098 - 29955045
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagt 298  Q
    |||||||||| |||||||||||||||||| |||| |||| ||||| |||||||||    
T  29955098 atttgatgggacccatgtgaattttaaccaatca-aaaaaagtgtgttgaaaagt 29955045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 30004252 - 30004199
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagt 298  Q
    |||||||||| |||||||||||||||||| |||| |||| ||||| |||||||||    
T  30004252 atttgatgggacccatgtgaattttaaccaatca-aaaaaagtgtgttgaaaagt 30004199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 35357386 - 35357305
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||| ||| || ||||||| |||||||| |||| || | ||||| ||||||| | | ||||||||||||||||    
T  35357386 cccatataaatttggtggttcacatgtgagttttaaccaatca-aagagagtgtgttgaaaaatatttgttagaatgtgtgtt 35357305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 13540227 - 13540327
Alignment:
Q  217 cccatcaaatcatgtga-acccatataaatttgatgggtcccatgtgaattttaaccgatc--agaaaatagtgttttgaaaagtgtgtgttagaatgtg 313  Q
    |||| |||||||||||| ||| ||||||||||| |||| || || |||||||||||| |||  ||| ||||||||  ||||||  |||||||| ||||||    
T  13540227 cccaccaaatcatgtgagacctatataaatttggtgggacctatatgaattttaaccaatcaaagagaatagtgtgctgaaaaacgtgtgttaaaatgtg 13540326  T
Q  314 t 314  Q
    |    
T  13540327 t 13540327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 48973353 - 48973317
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  48973353 ctcaaaaccgatccaaaccagaccgcaaacaccccta 48973317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 7607905 - 7607860
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7607905 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 7607860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 16704987 - 16704942
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  16704987 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 16704942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 30396050 - 30396094
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  30396050 tttttacctcaaaaccgatccaaaccggaccgcgaacacccctag 30396094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 4033086 - 4033143
Alignment:
Q  259 tgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||| |||| || ||||||| ||||||||||||||||| ||||||||||    
T  4033086 tgtgaattttaaccaatca-aagatagtgtattgaaaagtgtgtgttaaaatgtgtgtt 4033143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 12731623 - 12731542
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||| |||||||||||||||| |||||||||||||||| |||| || | | ||| |||| |||||||| ||||||| ||||||    
T  12731623 cccaaataaatttgatgggtctcatgtgaattttaaccaatca-aagagaatgtgttgagaagtgtgtattagaatatgtgtt 12731542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 21947197 - 21947231
Alignment:
Q  30 aaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||||||||||||||||||||||||||||    
T  21947197 aaaaccgatccaaaccggaccgcgaacacccctag 21947231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 5706699 - 5706770
Alignment:
Q  245 tttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||||||||| |||||||| | |||| || | ||||| ||||||||| ||||||| ||||||||||    
T  5706699 tttgatgggtcccatgtaaattttaatcaatca-aagagagtgtgttgaaaagtatgtgttaaaatgtgtgtt 5706770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 31946914 - 31946969
Alignment:
Q  261 tgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||||||||||||| | ||| | |||| ||||||||||||||||||||||||||||    
T  31946914 tgaattttaaccgataaaaaagt-gtgtgttgaaaagtgtgtgttagaatgtgtgtt 31946969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 35040314 - 35040353
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacacccctaggt 66  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  35040314 ctcaaaaccgaaccaaaccgcaccgcgaacacccctaggt 35040353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 1473664 - 1473603
Alignment:
Q  255 cccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||||||| |||| || ||||||| ||||||| ||||| ||| ||||||||||    
T  1473664 cccatgtgaattttaaccaatca-aagatagtgtgttgaaaaatgtgtattaaaatgtgtgtt 1473603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 16110715 - 16110749
Alignment:
Q  30 aaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    |||||||||||||||||||||| ||||||||||||    
T  16110715 aaaaccgatccaaaccggaccgtgaacacccctag 16110749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 479915 - 479791
Alignment:
Q  192 tttattagttaaaattcatataagacccatcaaatcatgtgaacccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgtttt 291  Q
    |||||| || ||||||||||  || | || |||||||||||   ||||||||||||| ||||  | ||||||||||||||| |||| || | ||||||||    
T  479915 tttattggtcaaaattcatacgagtctcaccaaatcatgtggggccatataaatttggtgggatcaatgtgaattttaaccaatca-aataaagtgtttt 479817  T
Q  292 gaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| ||| | ||| ||| ||||||    
T  479816 gaaaaatgtttattaaaatttgtgtt 479791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 3625146 - 3625198
Alignment:
Q  195 attagttaaaattcatataagacccatcaaatcatgtgaacccatataaattt 247  Q
    |||| |||||||||| || || |||| |||||||||||| |||||||||||||    
T  3625146 attaattaaaattcacatgagtcccaccaaatcatgtgatcccatataaattt 3625198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 24783899 - 24784006
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtgaac-ccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaag 297  Q
    ||||||||||||||    |||| ||||||||||| |  ||||||||||||||||| || ||||| |||||||| | |||| || ||||||| || ||||     
T  24783899 gttaaaattcatatggatcccaccaaatcatgtggattccatataaatttgatggatctcatgtaaattttaatcaatca-aagatagtgtgttaaaaaa 24783997  T
Q  298 tgtgtgtta 306  Q
    |||||||||    
T  24783998 tgtgtgtta 24784006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5559873 - 5559918
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  5559873 atttttgacctcaaaaccgatccaaaccggaccgcgaacaccccta 5559918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 5695665 - 5695780
Alignment:
Q  157 caacatatattttaatacacattttttaaca---ttattttattagttaaaattcatataagacccatcaaatcatgtgaacccatataaatttgatggg 253  Q
    ||||| ||||||||| ||||| |||| ||||   || |||||||  ||||||||||||| ||||  | ||||||||| || |||||||||||||||||||    
T  5695665 caacacatattttaacacacacttttcaacacattttttttattgtttaaaattcatatgagact-accaaatcatgggatcccatataaatttgatggg 5695763  T
Q  254 tcccatgtgaattttaa 270  Q
    || ||| ||||||||||    
T  5695764 tctcatatgaattttaa 5695780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 7444351 - 7444432
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||| | ||||||||||||||||||||  |||| || | | ||| ||||||||||| ||||||||||||||||    
T  7444351 cccatataaatttggtaggtcccatgtgaattttaactcatca-aagagaatgtgttgaaaagtgtttgttagaatgtgtgtt 7444432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 31970189 - 31970116
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaa 309  Q
    |||||||||||||| ||||| | ||||||||||||||| |||| |||| ||||| ||||||| ||||||||||||    
T  31970189 cccatataaatttggtgggttcaatgtgaattttaaccaatca-aaaagagtgtgttgaaaaatgtgtgttagaa 31970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 14462185 - 14462230
Alignment:
Q  18 atttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||    
T  14462185 atttttaacctcaaaaccgatccaaaccagaccgcaaacaccccta 14462230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 49403465 - 49403578
Alignment:
Q  163 atattttaatacacattttttaacattatttt----attagttaaaattcatataagacccatcaaatcatgtgaac-ccatataaatttgatgggtccc 257  Q
    ||||| ||| ||||||||||||||||  ||||    ||| ||||||||||| ||||| |||||||||| |||||    ||||||||||||| |||||| |    
T  49403465 atattctaacacacattttttaacatattttttatgattggttaaaattcacataagtcccatcaaattatgtgggttccatataaatttggtgggtctc 49403564  T
Q  258 atgtgaattttaac 271  Q
    ||||||||||||||    
T  49403565 atgtgaattttaac 49403578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 317
Target Start/End: Original strand, 34437631 - 34437748
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtga-acccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaag 297  Q
    ||||||||||| ||  | |||| |||||||||||  |||||||||| ||||  ||| |||||||||||||||||| |||| || | ||||| ||||||||    
T  34437631 gttaaaattcacatgggtcccaccaaatcatgtgggacccatataa-tttggggggacccatgtgaattttaaccaatca-aagagagtgtgttgaaaag 34437728  T
Q  298 tgtgtgttagaatgtgtgtt 317  Q
    || |||||| ||||||||||    
T  34437729 tgcgtgttaaaatgtgtgtt 34437748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 40095518 - 40095561
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  40095518 ttttaacctcaaaaccgaaccaaaccgcaccgcgaacaccccta 40095561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 40374106 - 40374064
Alignment:
Q  235 cccatataaatttgatgggtcccatgtgaattttaaccgatca 277  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  40374106 cccatataaatttgatgagtcctatgtgaattttaaccgatca 40374064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 45563117 - 45563214
Alignment:
Q  217 cccatcaaatcatgt-gaacccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgt 314  Q
    |||| |||||||||| || | |||||||||||| ||| || ||||| ||||||||||||||| || | ||||| |||||||||||| | ||||||||||    
T  45563117 cccaccaaatcatgttgatctcatataaatttggtggatctcatgtaaattttaaccgatca-aagaaagtgtgttgaaaagtgtgcgatagaatgtgt 45563214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 49822602 - 49822679
Alignment:
Q  239 tataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    |||||||||||||||  ||||||||||||||||| |||| || | ||||| ||||||| ||||||||| ||| ||||||    
T  49822602 tataaatttgatgggatccatgtgaattttaaccaatca-aagagagtgtgttgaaaaatgtgtgttataatatgtgtt 49822679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 939367 - 939446
Alignment:
Q  199 gttaaaattcatataagacccatcaaatcatgtgaa-cccatataaatttgatgggtcccatgtgaattttaaccgatca 277  Q
    ||||||||||| ||||  | |||||||| ||||| | |||||||||||||| || ||||||||| |||||||||| ||||    
T  939367 gttaaaattcacataaatctcatcaaattatgtggatcccatataaatttggtgtgtcccatgtaaattttaaccaatca 939446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36203540 - 36203583
Alignment:
Q  20 ttttaacctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    |||||||||||||||||| ||||| || ||||||||||||||||    
T  36203540 ttttaacctcaaaaccgaaccaaatcgcaccgcgaacaccccta 36203583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 22173373 - 22173407
Alignment:
Q  26 cctcaaaaccgatccaaaccggaccgcgaacaccc 60  Q
    ||||||||| |||||||||||||||||||||||||    
T  22173373 cctcaaaactgatccaaaccggaccgcgaacaccc 22173407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 38663724 - 38663758
Alignment:
Q  238 atataaatttgatgggtcccatgtgaattttaacc 272  Q
    ||||||||||| |||||||||||||||||||||||    
T  38663724 atataaatttggtgggtcccatgtgaattttaacc 38663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 317
Target Start/End: Complemental strand, 21281538 - 21281465
Alignment:
Q  244 atttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgtgttagaatgtgtgtt 317  Q
    ||||| |||| || ||||||||||||||| |||| |||| | ||| ||||||||||| ||||| ||| ||||||    
T  21281538 atttggtgggacctatgtgaattttaaccaatcaaaaaagaatgtgttgaaaagtgtatgttaaaatatgtgtt 21281465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 16529604 - 16529640
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacaccccta 63  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  16529604 ctcaaaaccgaaccaaaccgcaccgcgaacaccccta 16529640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 40668998 - 40669065
Alignment:
Q  234 acccatataaatttgatgggtcccatgtgaattttaaccgatcagaaaatagtgttttgaaaagtgtgt 302  Q
    ||||||||||||||| |||  ||| |||||||||||||| |||| || | ||||| |||||||||||||    
T  40668998 acccatataaatttggtggaacccgtgtgaattttaaccaatca-aagagagtgtgttgaaaagtgtgt 40669065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 881 - 842
Alignment:
Q  25 acctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  881 acctcaaaaccgatccaaaccggaccgtgaacacccctag 842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 136409 - 136348
Alignment:
Q  217 cccatcaaatcatgtga-acccatataaatttgatgggtcccatgtgaattttaaccgatca 277  Q
    ||||||||||||||||  |||||||||||||||||||| | ||| |||||||||||| ||||    
T  136409 cccatcaaatcatgtgtgacccatataaatttgatgggactcatatgaattttaaccaatca 136348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 40689 - 40726
Alignment:
Q  27 ctcaaaaccgatccaaaccggaccgcgaacacccctag 64  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  40689 ctcaaaaccgaaccaaaccgcaccgcgaacacccctag 40726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University