View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_66 (Length: 354)
Name: NF17651_low_66
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_66 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 193 - 340
Target Start/End: Complemental strand, 38178246 - 38178099
Alignment:
| Q |
193 |
taaagtgaatattaaagcacagtgaagcagagttgttttgtcatggtgtaaggggattagaattgtatatacaaattgatgttaaacggtgttaatagag |
292 |
Q |
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| T |
38178246 |
taaagtgaatattaaagcacagtgaagcagagttgttttgtcatggtgtaaggggattagaattgtatatacaaattgatgttaaacggtgttaatagag |
38178147 |
T |
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| Q |
293 |
gggaggtgattgtttttattaaaatagagggggtttatgtgttgttta |
340 |
Q |
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| T |
38178146 |
gggaggtgattgtttttattaaaatagagggggtttatgtgttgttta |
38178099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 38178370 - 38178256
Alignment:
| Q |
15 |
tttcataggcgcaaatcaaaagcaatcggatatctgaaaaagaatccatgatactataatttcagcaacatcgcttcacaccatatcaagatacattggc |
114 |
Q |
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| T |
38178370 |
tttcataggcgcaaatcaaaagcaatctgatatctgaaaaagaatccatgatactataatttcagcaacatcgcttcacaccatatcaagatacattggc |
38178271 |
T |
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| Q |
115 |
catgaagtatattac |
129 |
Q |
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| T |
38178270 |
catgaagtatattac |
38178256 |
T |
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