View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_68 (Length: 349)
Name: NF17651_low_68
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 43436130 - 43436451
Alignment:
| Q |
15 |
aaaataatccatttgtaccttcattgctatacgatccttcacaaatgatgtctgaactatatccttgaagaagccaatcttctgcgcaaagaacgactcg |
114 |
Q |
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| T |
43436130 |
aaaataatccatttgtaccttcattgctatacgatccttcacaaatgatgtctgaactatatccttgaagaagtcaatcttctgcgcaaagaacgactcg |
43436229 |
T |
|
| Q |
115 |
ggtgcacggggttcaatagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagcagcgc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436230 |
ggtgcacggggttcaatagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagcagcgc |
43436329 |
T |
|
| Q |
215 |
cgtcatctgatacgtagcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagtattggcagtcacaagcggaggctcctttaatgg |
314 |
Q |
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| T |
43436330 |
cgtcatccgatacgtagcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagtattggcagtcacaagcggaggctcctttaacgg |
43436429 |
T |
|
| Q |
315 |
gtcaacagtgctgacaaaaatg |
336 |
Q |
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|||||||||||||||||||||| |
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| T |
43436430 |
gtcaacagtgctgacaaaaatg |
43436451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 336
Target Start/End: Original strand, 13826143 - 13826449
Alignment:
| Q |
30 |
taccttcattgctatacgatccttcacaaatgatgtctgaactatatccttgaagaagccaatcttctgcgcaaagaacgactcgggtgcacggggttca |
129 |
Q |
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| T |
13826143 |
taccttcattgctctacgatccttgacaaatgatgtctgaaccttatccttcaagtaatcaatcttctgtgcaaagtaccactcgggtgcgcggggttca |
13826242 |
T |
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| Q |
130 |
atagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagcagcgccgtcatctgatacgt |
229 |
Q |
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||| ||||||||||| ||| |||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||| ||||||||||| || || | |
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| T |
13826243 |
atattatacttcttggtgaatggaacccattttcttgcaaactctgatgtttcagcaagagcttcaaatgtcaacatagcggcgccgtcatcagaaacat |
13826342 |
T |
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| Q |
230 |
agcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagtattggcagtcacaagcggaggctcctttaatgggtcaacagtgctgac |
329 |
Q |
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||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| || ||||| |
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| T |
13826343 |
agcaggaaaccttatccactggatagtcaactgaaagaatagaaagtacagtattggcagtcacgagtggaggctcctttaacgggtcaacggtactgac |
13826442 |
T |
|
| Q |
330 |
aaaaatg |
336 |
Q |
| |
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||||||| |
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| T |
13826443 |
aaaaatg |
13826449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 9478041 - 9477735
Alignment:
| Q |
30 |
taccttcattgctatacgatccttcacaaatgatgtctgaactatatccttgaagaagccaatcttctgcgcaaagaacgactcgggtgcacggggttca |
129 |
Q |
| |
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||||||||||||| ||||||| || |||||||||| || || |||| || ||| || |||| |||| | |||| || |||| ||||| || |||||| |
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| T |
9478041 |
taccttcattgctctacgatctttgacaaatgatgcttggaccttatctttcaagtagtcaattttctttgaaaagtaccactcaggtgctcgtggttca |
9477942 |
T |
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| Q |
130 |
atagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagcagcgccgtcatctgatacgt |
229 |
Q |
| |
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|| ||| ||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| ||||||||||||||||| || ||||| || || | |
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| T |
9477941 |
atttcatatttcttgcagaaaggaacccatttccttgcaaattctgatgtctcggcaagagcttcaaatgtcaacatagcagcaccatcatcagagacat |
9477842 |
T |
|
| Q |
230 |
agcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagtattggcagtcacaagcggaggctcctttaatgggtcaacagtgctgac |
329 |
Q |
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| || || |||||||||||||| || ||||| |||||||| || |||||||||||||| ||||||| || ||||||||||| || |||||||| ||||| |
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| T |
9477841 |
aacatgagaccttatccactgggtagtcaacagcaagaatggatagtacagtattggctgtcacaattgggggctcctttaacggatcaacagtactgac |
9477742 |
T |
|
| Q |
330 |
aaaaatg |
336 |
Q |
| |
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|||||| |
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| T |
9477741 |
gaaaatg |
9477735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 44377540 - 44377666
Alignment:
| Q |
137 |
acttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagcagcgccgtcatctgatacgtagcagga |
236 |
Q |
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||||||||||||| |||||||||||||| ||||||||||| || | | ||| ||||| ||||| | |||||| || ||||| ||||| || ||||| | |
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| T |
44377540 |
acttcttgcagaatggaacccattttcttgcaaactctgaagtttctgaaagggcttcaaatgttagcatagctgcaccgtcgtctgagacatagcacgc |
44377639 |
T |
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| Q |
237 |
aaccttatccactggataatcaactgc |
263 |
Q |
| |
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|| || ||||| |||||||| ||||| |
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| T |
44377640 |
cactttttccaccggataatctactgc |
44377666 |
T |
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