View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_69 (Length: 348)
Name: NF17651_low_69
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_69 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 21613938 - 21613615
Alignment:
| Q |
19 |
cctatagtgttgtta--gagagaggagggtgtgatcctataaaatgagtattagagaaggttaaggattaagtatggttaatgaatttgaagtttattag |
116 |
Q |
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| T |
21613938 |
cctatagtgttgttaaagagagaggagagtgtgatcctataaaatgagtattagagaaggttaaggattaagtatggttaatgaatttgaagtttattag |
21613839 |
T |
|
| Q |
117 |
atctagacatgaaaattttgctatgggtgagagtggttttt-gctatggttggtttagtgtcaaattgtggttaaaagaagtgggtagaagtttcactca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21613838 |
atctagacatgaaaattttgctatgggtgagagtggttttttgcaatggttggtttagtgtcaaattgtggttaaaagaagtgggtagaagtttcactca |
21613739 |
T |
|
| Q |
216 |
tgatgaagatgggtctttgttttataatggtgattatagggtgtggggaatgtgagttgatggatttggtttaaataannnnnnngggtttgggaaagtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21613738 |
tgatgaagatgggtctttgttttataatggtgattatagggtgtggggaatgtgagttgatggatttggtttaaataatttttttgggtttgggaaagtt |
21613639 |
T |
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| Q |
316 |
ttgttgtattattgattttctttt |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
21613638 |
ttgttgtattattgattttctttt |
21613615 |
T |
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