View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_72 (Length: 335)
Name: NF17651_low_72
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_72 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 17585474 - 17585158
Alignment:
| Q |
14 |
cagaagatactaaagaagtaaatttgttagcatcaacagtaattttaagtatttcaatgcaaagcctttctatgtgattggatttgtgtagtagtctttc |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17585474 |
cagaagatactaaagaagtaactttgttagcatcaatagtaattttaagtatttcaatgcaaagcctttctacgtgattggatttgtgtagtagtctttc |
17585375 |
T |
|
| Q |
114 |
cacaagatccaagaggcagttagctgagtcctcatttttgagatttgactcataaagaggataaggaattttaaattcaaag-cagataattgagtccac |
212 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17585374 |
cacaagatctaagaggcagttaa-taagtcctcattttcaagatttgactcataaagaggatgaggaattttaaattcaaagacagataattgagtccac |
17585276 |
T |
|
| Q |
213 |
aagtatctccactttggtgataatattgaagttcaaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgctta |
312 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17585275 |
gagtatctccactttggtgataagattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgctta |
17585176 |
T |
|
| Q |
313 |
tcatatctttcatatcac |
330 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
17585175 |
tcatatctttcatgtcac |
17585158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 17594110 - 17594017
Alignment:
| Q |
198 |
gataattgagtccacaagtatctccactttggtgataatattgaagttcaaaccgcctctttggttgagagtaaagaaagaatataatgaagaa |
291 |
Q |
| |
|
||||| || |||||||||||| ||||||||| | |||||| ||||||| || || ||||| || | ||||||||||||||||| | |||||| |
|
|
| T |
17594110 |
gataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaa |
17594017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 14740729 - 14741038
Alignment:
| Q |
14 |
cagaagatactaaagaagtaaatttgttagcatcaacagtaattttaagtatttcaatgcaaagcctttctatgtgattggatttgtgtagtagtctttc |
113 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740729 |
cagaagatactaaagtagtaaatttgttaacatcaacagtaattttaagtatttcaatgcaaagcctttctatgtgattggatttgtgtagtagtctttc |
14740828 |
T |
|
| Q |
114 |
cacaagatccaagaggcagttagctgagtcctcatttttgagatttgactcataaagaggataaggaattttaaattcaaag-cagataattgagtccac |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14740829 |
cacaagatctaagaggcagttagctgagtcctcatttttaa------attca--aagaggataaggaattttaaattcaaagacagataattgagtccac |
14740920 |
T |
|
| Q |
213 |
aagtatctccactttggtgataatattgaagttcaaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgctta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14740921 |
aagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatcaggcatgttgctta |
14741020 |
T |
|
| Q |
313 |
tcatatctttcatatcac |
330 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
14741021 |
tcatatctttcatgtcac |
14741038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 14729377 - 14729470
Alignment:
| Q |
198 |
gataattgagtccacaagtatctccactttggtgataatattgaagttcaaaccgcctctttggttgagagtaaagaaagaatataatgaagaa |
291 |
Q |
| |
|
||||| || |||||||||||| ||||||||| | |||||| ||||||| || || ||||| || | ||||||||||||||||| | |||||| |
|
|
| T |
14729377 |
gataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaagaa |
14729470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 31219152 - 31219280
Alignment:
| Q |
200 |
taattgagtccacaagtatctccactttggtgataatattgaagttcaaaccgcctctttggttgagagtaaagaaagaatataatgaagaatggcatca |
299 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||||| ||||||| || ||||||| || ||||| |||||||||||||| |||||| | ||| |
|
|
| T |
31219152 |
taattgggtccacaagtatctccactttgttgctaatatagaagttcttacagcctcttccgtagagaggcgagaaagaatataataaagaattccctca |
31219251 |
T |
|
| Q |
300 |
ggcatgttgcttatcatatctttcatatc |
328 |
Q |
| |
|
|| | | ||| ||||||||||||||||| |
|
|
| T |
31219252 |
ggtaaatcgctaatcatatctttcatatc |
31219280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 54220237 - 54220279
Alignment:
| Q |
69 |
aatgcaaagcctttctatgtgattggatttgtgtagtagtctt |
111 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
54220237 |
aatgcagagcctttctatgtgattagatttgtgaagtagtctt |
54220279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 31001255 - 31001203
Alignment:
| Q |
278 |
aatataatgaagaatggcatcaggcatgttgcttatcatatctttcatatcac |
330 |
Q |
| |
|
|||||||||||||||||| ||| ||| || |||||| ||||||||||| |||| |
|
|
| T |
31001255 |
aatataatgaagaatggcgtcacgcaagtcgcttattatatctttcatgtcac |
31001203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University