View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_73 (Length: 335)
Name: NF17651_low_73
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 8154110 - 8153801
Alignment:
| Q |
14 |
atatatctatccaaaacatctctcgtatatcaaatatttagttcattcacggactaatactcacacttgaactcaacacatgaagtagatgtttctagat |
113 |
Q |
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| T |
8154110 |
atatatctatccaaaacatctctcgtatatcaaatatttagttcattcatggactaatactcacacttgaactcaacacatgaagtagatgtttctagat |
8154011 |
T |
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| Q |
114 |
atgaggaaggtgaagaggaagtttgaagtgaagttgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggta |
213 |
Q |
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| T |
8154010 |
atgaggaaggtgaagaggaagtttgaagtgaagttgtgatgccggcgagcgatccgccacgccgtgccaacagattccacctttacaataagacatggta |
8153911 |
T |
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| Q |
214 |
ttgtgttgggaagtacgaggatgttggtcgacaaaaacacacttactaatcttccgagacaaatcccacattaaagttgccaccaaaatcaaagccacca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8153910 |
ttgtgttgggaagtacgaggatgttggtcgacaaaaacacacttactaatcttccgagacaaatcccacattaaagttgccaccaaaatcaaagccacca |
8153811 |
T |
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| Q |
314 |
acgttgtaga |
323 |
Q |
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|||||||||| |
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| T |
8153810 |
acgttgtaga |
8153801 |
T |
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