View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_76 (Length: 317)
Name: NF17651_low_76
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_76 |
 | |
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| [»] scaffold0061 (1 HSPs) |
| | |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 17810666 - 17810366
Alignment:
| Q |
6 |
aattttactgcaatgactcaagacaccgtgaactcaacttcatggaagaatcatgggtatatgttcagtgcggctactttatctttcgaaatattttatg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| || ||| ||||||| ||||| |
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|
| T |
17810666 |
aattttactgcaatgactcaagacaccgtgaactcaacttcatcgaagaatcatgggtatacaatcagtacggctacttcatttttggaaatatattatg |
17810567 |
T |
|
| Q |
106 |
attttacctcgttcctgacgtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacagg |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
17810566 |
atttcacctcgttcctgacgtggaaaggtgtagaccaaccttacaaagatgctgatgtgtttttaaaaagcattgatctttcaagcaaccatcttacagg |
17810467 |
T |
|
| Q |
206 |
ggacataccagttgaaattgagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttc |
305 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
17810466 |
ggacataccagctgaaattgagtacttgtttggattgatttccttaaatttgtcaaggaacaatctcagtggggaagtcatttcaaacataggaaacttc |
17810367 |
T |
|
| Q |
306 |
a |
306 |
Q |
| |
|
| |
|
|
| T |
17810366 |
a |
17810366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 35900325 - 35900506
Alignment:
| Q |
125 |
gtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaatt |
224 |
Q |
| |
|
||||||||| |||||||||| ||||| | || || ||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
35900325 |
gtggaaaggggtagaccaactttacataaatccttataggtttttaaaaacaattgatctttcaagcaaccatcttacaggggaaataccagttgaaatg |
35900424 |
T |
|
| Q |
225 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||| |
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|
| T |
35900425 |
gagtacttatttggtttgatttccttaaatttgtcgaggaacaatctcagtggggaaatcattccgaacataggaaacttca |
35900506 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 11543327 - 11543147
Alignment:
| Q |
126 |
tggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaattg |
225 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||| |||| | ||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||| |
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|
| T |
11543327 |
tggaaaggtgtagatcaaccctacagaaatgcagataggcttttaaaaagcattgatatgtcaagcaaccatcttacaggggaaataccaatggaaattg |
11543228 |
T |
|
| Q |
226 |
agtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
|||| || ||||||||||||| |||||||||||||| |||| |||||||||| |||| ||| |||||||||||||||||| |
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|
| T |
11543227 |
agtatttaattggattgatttcattaaatttgtcaagaaacaatctcagtgggaaaataattgcaaacataggaaacttca |
11543147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 44613887 - 44614068
Alignment:
| Q |
125 |
gtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaatt |
224 |
Q |
| |
|
|||||||||||| |||||| | || | |||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||| || |
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|
| T |
44613887 |
gtggaaaggtgtggaccaagacttcaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttactggggaaataccatcggaagtt |
44613986 |
T |
|
| Q |
225 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
44613987 |
caatacttaattggattgatttccttaaatttgtcaaggaacaatctcagtggggaaatcatttcaaacataggaaacttca |
44614068 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Original strand, 44146311 - 44146374
Alignment:
| Q |
241 |
tgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaactt |
304 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44146311 |
tgatttccttaaatttgtcaaggaacaatctcagtggggaaatcatttcaaacataggaaactt |
44146374 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 44794451 - 44794352
Alignment:
| Q |
125 |
gtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaatt |
224 |
Q |
| |
|
|||||||||||| |||||| | || | |||| |||| ||||||||||| |||||||||||||||||||||||||||||| || |||||| ||||||| |
|
|
| T |
44794451 |
gtggaaaggtgtggaccaagacttcaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttacaggcgaaataccaactgaaatt |
44794352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 44146259 - 44146308
Alignment:
| Q |
166 |
ttttaaaaagcattgatctctcaagcaaccatcttacaggggacatacca |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
44146259 |
ttttaaaaaccattgatctctcaagcaaccatcttacagggtaaatacca |
44146308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 126 - 306
Target Start/End: Complemental strand, 28032 - 27852
Alignment:
| Q |
126 |
tggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaattg |
225 |
Q |
| |
|
|||||||||||||||||| |||| | |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
28032 |
tggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttacaggggaaataccaactgaaatgg |
27933 |
T |
|
| Q |
226 |
agtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27932 |
agtacttatttggtttgatttcattaaatttgtcaaggaacaatctcagtggggaaatcattttaaacataggaaacttca |
27852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 126 - 306
Target Start/End: Original strand, 170760 - 170940
Alignment:
| Q |
126 |
tggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaattg |
225 |
Q |
| |
|
|||||||||||||||||| |||| | |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
170760 |
tggaaaggtgtagaccaatggtacaaaaatgcagataagtttttaaaaaccattgatctctcaagcaaccatcttacaggggaaataccaactgaaatgg |
170859 |
T |
|
| Q |
226 |
agtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
170860 |
agtacttatttggtttgatttcattaaatttgtcaaggaacaatctcagtggggaaatcattttaaacataggaaacttca |
170940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 306
Target Start/End: Original strand, 181841 - 182027
Alignment:
| Q |
120 |
ctgacgtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttg |
219 |
Q |
| |
|
|||| ||||||||||| |||| || |||| | |||| |||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||| || |
|
|
| T |
181841 |
ctgatgtggaaaggtgcagacagacggtacaaaaatgcagataagtttttaaaaacgattgatctctcaagcaacaatcttacaggggaaataccaactg |
181940 |
T |
|
| Q |
220 |
aaattgagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
|||| | ||||| ||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
181941 |
aaatgcaatacttagttgcattgatttcattaaatttgtcaaggaacaatctccgtggggaaatcatttcaaacataggaaacttca |
182027 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 125 - 306
Target Start/End: Original strand, 26729504 - 26729685
Alignment:
| Q |
125 |
gtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaatt |
224 |
Q |
| |
|
||||||||||| ||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
26729504 |
gtggaaaggtgaagaccaaccctacaaaaatgcagatatgtttttaaaaagcattgatctctcaagcaactatcttttaggggaaataccaactgaaatg |
26729603 |
T |
|
| Q |
225 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
26729604 |
gagtatttagttggattgatttccttaaatttgtcaaggaacaatcttagtggggaaataatttcaaacataggaaacttca |
26729685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 29227757 - 29227576
Alignment:
| Q |
125 |
gtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaatt |
224 |
Q |
| |
|
||||||||||||| |||||| ||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
29227757 |
gtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctctcaagcaaccatcttacgggggaaataccaactgaaatg |
29227658 |
T |
|
| Q |
225 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
|| ||| |||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
29227657 |
aagcgcttatttggattgattgccttaaatttgtcaaggaacaatctcagcgtggaaatcatttcaaacataggaaacttca |
29227576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 125 - 306
Target Start/End: Complemental strand, 29341056 - 29340875
Alignment:
| Q |
125 |
gtggaaaggtgtagaccaaccttacagagatgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaatt |
224 |
Q |
| |
|
||||||||||||| |||||| ||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||| |||||| |
|
|
| T |
29341056 |
gtggaaaggtgtaaaccaacgttacaaaaatgctgataggtttttaaaaaccattgatctctcaagcaaccatcttacgggggaaataccaactgaaatg |
29340957 |
T |
|
| Q |
225 |
gagtacttgtttggattgatttccttaaatttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
|| ||| |||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
29340956 |
aagcgcttatttggattgattgccttaaatttgtcaaggaacaatctcagcgtggaaatcatttcaaacataggaaacttca |
29340875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 29506381 - 29506229
Alignment:
| Q |
154 |
atgctgatatgtttttaaaaagcattgatctctcaagcaaccatcttacaggggacataccagttgaaattgagtacttgtttggattgatttccttaaa |
253 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||||||||||| |||| ||| || |||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
29506381 |
atgcagataagtttttaaacagcattgatctctcaagcaaccaccttataggagaaataccaacagaaattgagtacttacttggattgacatccttaaa |
29506282 |
T |
|
| Q |
254 |
tttgtcaaggaacattctcagtggggaaatcatttcaaacataggaaacttca |
306 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||| |||||||||| |||| |
|
|
| T |
29506281 |
tttgtcaaggaacaatcttagtggggaaataatttcagacataggaaaattca |
29506229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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