View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_78 (Length: 316)
Name: NF17651_low_78
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 45756778 - 45757068
Alignment:
| Q |
1 |
ataagtcaagctactaagcctctattaaactccgtgggaagcagcatccgtcggttatgaaatatcatatgattcgtatccactatacaagttatatttt |
100 |
Q |
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| T |
45756778 |
ataagtcaagctactaagcctctattacactccgtgggaagcagcatccgtcggttatgaaatatcatatgattcgtatccactatacaagttatatttt |
45756877 |
T |
|
| Q |
101 |
ctaaaatgagacatgcatttttaaagtactggatttcgcgttatttatttcgggtagctttcgcgtagctttgggtgaatgatcctaaaaacgatccacc |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45756878 |
ctaaaatgagacatgcatttttaaagtaccggatttcgcattatttatttcgggtagctttcacgtagctttgggtgaatgatcctaaaaacgatccacc |
45756977 |
T |
|
| Q |
201 |
aatcaaactaatgnnnnnnngttaactagcatcattcataaacaagcaaatacaagatcaatttaactatatgattctcttaattttccctc |
292 |
Q |
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| T |
45756978 |
aatcaaactaatg-aaaaaagttaactagcatcattcataaacaagcaaatacaagatcaatttgactatatgattctcttaattttccctc |
45757068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 34139541 - 34139576
Alignment:
| Q |
174 |
ggtgaatgatcctaaaaacgatccaccaatcaaact |
209 |
Q |
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| T |
34139541 |
ggtgaatgatcctaaaaacgatcgaccaatcaaact |
34139576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 209
Target Start/End: Original strand, 34152157 - 34152192
Alignment:
| Q |
174 |
ggtgaatgatcctaaaaacgatccaccaatcaaact |
209 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
34152157 |
ggtgaatgatcctaaaaacgatcgaccaatcaaact |
34152192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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