View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_79 (Length: 316)
Name: NF17651_low_79
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 41080873 - 41080564
Alignment:
| Q |
1 |
caccttcggagatcgatattcttgtggtaaatgtatctttattctcttctgttccttctttaacttcaagaatcattaaccattacagaatgagagagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41080873 |
caccttcggagatcgatattcttgtggtaaatgtatctttattctcttctgttccttctttaacttcaagaatcattaaccattacaaaatgagagagga |
41080774 |
T |
|
| Q |
101 |
tataaaagcttataacctatctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080773 |
tataaaagcttataacctatctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgct |
41080674 |
T |
|
| Q |
201 |
cttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080673 |
cttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaa |
41080574 |
T |
|
| Q |
301 |
ttcatctcac |
310 |
Q |
| |
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||| |||||| |
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| T |
41080573 |
ttcttctcac |
41080564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 303
Target Start/End: Complemental strand, 23078267 - 23078085
Alignment:
| Q |
121 |
ctggtatgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtc |
220 |
Q |
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| T |
23078267 |
ctggaatgggttgtagtgctagtcttatatcagtagatattgttaaaaacattttcaaatcacaaagaaacaagttagcacttttggtcacatcagagtc |
23078168 |
T |
|
| Q |
221 |
tcttagtacaaattggtattcaggaatcaataggtcaatgattcttgcaaattgtcttttccgtaccggcggttgtgcaattc |
303 |
Q |
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| T |
23078167 |
tcttagtccaaattggtatcctggtagtaatagatcaatgatcttagccaattgtctttttcgcaccggcggttgtgccattc |
23078085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 295
Target Start/End: Complemental strand, 23073728 - 23073485
Alignment:
| Q |
52 |
ttccttctttaacttcaagaatcattaaccattacagaatgagagaggatataaaagcttataacctatctggtatgggttgtagtgctagtctaatctc |
151 |
Q |
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||||||||||| |||| |||||||||||| ||||| ||||||| | || |||||| || || || | || |||||||||||||| ||||| || || |
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| T |
23073728 |
ttccttctttatcttcgcgaatcattaaccgttacaaaatgagacacgacgtaaaagtgtacaatctcaccggaatgggttgtagtgcaagtcttatatc |
23073629 |
T |
|
| Q |
152 |
attagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctcttagtacaaattggtattcaggaatcaat |
251 |
Q |
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|||||| || || ||||||||||||| ||| | | || |||| || |||||| | |||||||||||||||||| ||||||||||| | || | || |
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| T |
23073628 |
attagatattgttaaaaacattttcaaatcacagagaaataagttagcacttttggtcacatcagagtctcttagtccaaattggtatactggcaatgat |
23073529 |
T |
|
| Q |
252 |
aggtcaatgattcttgcaaattgtcttttccgtaccggcggttg |
295 |
Q |
| |
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|| |||||||| || || || |||||||||||| |||||||||| |
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| T |
23073528 |
agatcaatgatcctagccaactgtcttttccgttccggcggttg |
23073485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 23110707 - 23110820
Alignment:
| Q |
126 |
atgggttgtagtgctagtctaatctcattagacgttattcaaaacattttcaagtcagaaaagaacaagtatgctcttttgttaacatcagagtctctta |
225 |
Q |
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|||||||| ||||||||||| || ||| |||| || || ||||||||||||| ||| ||| || |||| || |||||| | ||||||||||||||| |
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| T |
23110707 |
atgggttgcagtgctagtcttatttcactagatattgttaaaaacattttcaaatcacaaagaaataagttagcacttttggtcacatcagagtctcttt |
23110806 |
T |
|
| Q |
226 |
gtacaaattggtat |
239 |
Q |
| |
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|| ||||||||||| |
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| T |
23110807 |
gtccaaattggtat |
23110820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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