View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_80 (Length: 313)

Name: NF17651_low_80
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_80
NF17651_low_80
[»] chr8 (1 HSPs)
chr8 (19-301)||(34379532-34379814)
[»] chr7 (1 HSPs)
chr7 (182-270)||(44419956-44420044)
[»] chr4 (2 HSPs)
chr4 (179-251)||(8814955-8815026)
chr4 (222-273)||(621250-621301)
[»] chr5 (2 HSPs)
chr5 (203-273)||(4032233-4032303)
chr5 (210-273)||(9082516-9082579)
[»] chr3 (1 HSPs)
chr3 (222-273)||(1576855-1576906)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 34379532 - 34379814
Alignment:
Q  19 agaatactgttgaaacagtttctttgcctatgttgttagtgatgtgtttcaatgcatttcctaatgtgtgtgtaagggaacaaagtgaaatagaagaaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34379532 agaatactgttgaaacagtttctttgcctatgttgttagtgatgtgtttcaatgcatttcctaatgtgtgtgtaagggaacaaagtgaaatagaagaaag 34379631  T
Q  119 gttacttcagaaagagtttgaatcttctacttttgaagatgaagaggcttttgcaaaagctggtgtgtggagcaaacttacatttaggtggttgaatcct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34379632 gttacttcagaaagagtttgaatcttctacttttgaagatgaagaggcttttgcaaaagctggtgtgtggagcaaacttacatttaggtggttgaatcct 34379731  T
Q  219 atatttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctgttcctccctctgaaactgctgctagtgcttc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34379732 atatttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctgttcctccctctgaaactgctgctagtgcttc 34379814  T

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Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 44420044 - 44419956
Alignment:
Q  182 tgtgtggagcaaacttacatttaggtggttgaatcctatatttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctg 270  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | |||||||||||||    
T  44420044 tgtgtggagtaaacttacatttaggtggttgaatcctatttttgaaatgggttggattcagaagcttgaacatatcaatgttccttctg 44419956  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 8814955 - 8815026
Alignment:
Q  179 tggtgtgtggagcaaacttacatttaggtggttgaatcctatatttgaaatgggtcggattcagaagcttgaa 251  Q
    |||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||    
T  8814955 tggtgtgtggagtaaacttacatttaggtggttgaat-ctatttttgaaatgggttggattcagaagcttgaa 8815026  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 621250 - 621301
Alignment:
Q  222 tttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctgttc 273  Q
    |||||||||||| ||||| ||||| |||||||| | ||||||||||||||||    
T  621250 tttgaaatgggttggattgagaagtttgaacatatcaatgttccttctgttc 621301  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 4032303 - 4032233
Alignment:
Q  203 taggtggttgaatcctatatttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctgttc 273  Q
    |||||||||||||||||| ||||||| |||| |||||||||||||||||||| | |||| |||||||||||    
T  4032303 taggtggttgaatcctatttttgaaacgggttggattcagaagcttgaacatatcaatgctccttctgttc 4032233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 9082579 - 9082516
Alignment:
Q  210 ttgaatcctatatttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctgttc 273  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||| | ||||||||||||||||    
T  9082579 ttgaatcctatttttgaaatgggttggattcagaatcttgaacatatgaatgttccttctgttc 9082516  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 1576906 - 1576855
Alignment:
Q  222 tttgaaatgggtcggattcagaagcttgaacatgttaatgttccttctgttc 273  Q
    |||||||||||| ||||| ||||| |||||||| | ||||||||||||||||    
T  1576906 tttgaaatgggttggattgagaagtttgaacatatcaatgttccttctgttc 1576855  T

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