View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_83 (Length: 311)
Name: NF17651_low_83
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_83 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 52996781 - 52996499
Alignment:
| Q |
11 |
tacaattacaatggatttatctttagatacgggttggactcatgaaagacaaagcttcaaatttgagtttccatgtgaatgtgttcggtgaagcaatcaa |
110 |
Q |
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| T |
52996781 |
tacaattacaatggatttatctttagatacgggttggactcatgaaagacaaagcttcaaatttgagtttccatgtgaatgtgttcagtgaagcaatcaa |
52996682 |
T |
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| Q |
111 |
agaaagcaatattgattgtaatttagtttgggtttttatttattgaaataatgatgaaaataacatggaaaatgtggattcatatgtggattccattatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52996681 |
agaaagcaatattgattgtaatttagtttgggtttttatttattgaaataatgatgaaaataacatggaaaatgtggattcatatgtggattccattatt |
52996582 |
T |
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| Q |
211 |
catgtgggatgatccactgccctccactccacacgnnnnnnntacacagacattatggtaaacaatcattttaatccttaaac |
293 |
Q |
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| T |
52996581 |
catgtgggatgatccactgccctccactccacacgaaaaaaatacacagacattatggtaaacaatcattttaatccttaaac |
52996499 |
T |
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