View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_87 (Length: 301)
Name: NF17651_low_87
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_87 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27646711 - 27646929
Alignment:
| Q |
1 |
taattacgctaatattgttgcttcttctaagcattttttatttatgatccttgaatctttctatgttaagatccatcctcctaatgttcctaagatcaaa |
100 |
Q |
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| T |
27646711 |
taattacgctaatattgttgcttcttcta-gcatttttgatttatgatccttgaatctttctatgttaagatccatcctcctaatgttcctaagatcaaa |
27646809 |
T |
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| Q |
101 |
gagatgatgtggctccctccagtttacctctggattaagtgtaacattatggcattgctgatggtagtcatggtcccgcatcttgtggtggtatatttag |
200 |
Q |
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| T |
27646810 |
gatatgatgtggctccctccggtttacctctggattaagtgtaacattatggcattgctcatggtagtcatggtcccgcatcttgtggtggtatatttag |
27646909 |
T |
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| Q |
201 |
agattaccaagctaattttc |
220 |
Q |
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| T |
27646910 |
agattaccaagctaattttc |
27646929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 27647119 - 27647182
Alignment:
| Q |
212 |
ctaattttcttggttgnnnnnnnaacaccttatgtattgtcatggttattgttggtggctatta |
275 |
Q |
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| T |
27647119 |
ctaattttcttggttgtttttttaacaccttatgtattgtcatggttattgttggtggctatta |
27647182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 34799184 - 34799254
Alignment:
| Q |
41 |
tttatgatccttgaatctttctatgttaagatccatcctcctaatgttcctaagatcaaagagatgatgtg |
111 |
Q |
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| T |
34799184 |
tttatgatccttaaatctttctttgttaagattcatcctcctaatgctcctgagataaaagagatgatgtg |
34799254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 21186891 - 21187006
Alignment:
| Q |
105 |
tgatgtggctccctccagtttacctctggattaagtgtaacatt-atggcattgctgatggtagtcatggtcccgcatcttgtggtggtatatttagaga |
203 |
Q |
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| T |
21186891 |
tgatgtggctcccttcggttcacatctgaattaagtataacactgattgtgttgttaatggtagtcttagtccagcttcctatggtggtatttttagaga |
21186990 |
T |
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| Q |
204 |
ttaccaagctaatttt |
219 |
Q |
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| T |
21186991 |
ttaccaagctaatttt |
21187006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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