View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_9 (Length: 585)
Name: NF17651_low_9
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Original strand, 45336707 - 45337147
Alignment:
| Q |
10 |
catcatcaccatctatttgcaaattcaagtgttgacttcttctcatttgtagtatcatcactagtacaaattttctttggttgattttgtaccacaattt |
109 |
Q |
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| T |
45336707 |
catcatcaccatctatttgcaa-ttcaagtgttgacttcttctcatttgtagtatcatcaccagtacaaattttctttggttgattttgtaccacaattt |
45336805 |
T |
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| Q |
110 |
ccaacacacgttcggggacaattttatatcatctagctcttgaattgcttatcaacttgaagatgatata------acttcaaataaattttatattgaa |
203 |
Q |
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| T |
45336806 |
ccaacacacgttcggggacaattttatatcatctagctcttgaattgcttatcaacttgaagatgatatagatataacttcaaataaattttatattgaa |
45336905 |
T |
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| Q |
204 |
acattaaatacacaatttctaagnnnnnnncttgtacattttgctagtgaaggtatggagatgcttcttggaccctattctttctcttctgtagaaaccg |
303 |
Q |
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| T |
45336906 |
acattaaatacacaatttctaagaaaaaa-cttgtacattttgctagtgaaggtatggagatgcttcttggaccctattctttctcttctgtagaaaccg |
45337004 |
T |
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| Q |
304 |
ttgcaaagatctcttcattgaaaggcctgactgcactggtgttgttggctctgaccctcttggtgtcttcactttttcttgcaacttaattttatttgca |
403 |
Q |
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| T |
45337005 |
ttgcaaagatctcttcattgaaaggcctgactgcactggtgttgttggctctgaccctcttggtgtcttcactttttcttgcaacttaattttatttgca |
45337104 |
T |
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| Q |
404 |
agcattaagatcgatttggcctgtacaacattcacattaaccc |
446 |
Q |
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| T |
45337105 |
agcattaagatcgatttggcctgtacaacattcacattaaccc |
45337147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 566
Target Start/End: Original strand, 45337207 - 45337272
Alignment:
| Q |
502 |
cggcctggtcaagaacagagggcggtaaaa-tgtagtatacctgaaactctgtgacatcagtaaga |
566 |
Q |
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| T |
45337207 |
cggcctagtcaagaacagagggcggtaaaaatgtagtatacctgaaactctgtgacatcagtaaga |
45337272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 6185038 - 6185163
Alignment:
| Q |
9 |
acatcatcaccatctatttgcaaattcaagtgttga---cttcttctcatttgtagtatcatcactagtacaaattttctttggttgattttgtaccaca |
105 |
Q |
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| T |
6185038 |
acatcatcaccatctacttgcaa-tagaagtgttgatttcttcttctcatttgcactatcatcactagtcctaattttctttggttgattttgaacgaca |
6185136 |
T |
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| Q |
106 |
atttccaacacacgttcggggacaatt |
132 |
Q |
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| T |
6185137 |
atttccaacacacgttcggggacaatt |
6185163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 6200116 - 6200207
Alignment:
| Q |
241 |
attttgctagtgaaggtatggagatgcttcttggaccctattctttctcttctgtagaaaccgttgcaaagatctcttcattgaaaggcctg |
332 |
Q |
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| T |
6200116 |
attttgctagtgataatatggagatgcttcttggaccctattctttctcttctgtagaaacctttgcaaagatcttttcatggaaagtcctg |
6200207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 340 - 443
Target Start/End: Original strand, 6200251 - 6200354
Alignment:
| Q |
340 |
tggtgttgttggctctgaccctcttggtgtcttcactttttcttgcaacttaattttatttgcaagcattaagatcgatttggcctgtacaacattcaca |
439 |
Q |
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| T |
6200251 |
tggtgttgatggttctgaccctattggtgtcatcactttttcttgcaccttaattctatttgccagcattaagatggatttggcctgcacgacattcaca |
6200350 |
T |
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| Q |
440 |
ttaa |
443 |
Q |
| |
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|||| |
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| T |
6200351 |
ttaa |
6200354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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