View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17651_low_90 (Length: 298)
Name: NF17651_low_90
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_90 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 17928745 - 17928476
Alignment:
| Q |
13 |
tgaaccccaaataaatcataaacacccacatttgaaaaatggaaacccttcatttgcaaaagtgagtgtttaaaagtttcagcctatcgcatgttggtca |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17928745 |
tgaaccccaaataaatcacaaacacccacatttgaaaaatggaaacccttcatttgcaaaagtgagtgtttaaaggtttcagcctatcgcatgttggtca |
17928646 |
T |
|
| Q |
113 |
tagaacattacaacacaactcaaaatccttattattaaattcaaattcaaatccataacatattatgtttagaaagactacataaagagataatccatag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17928645 |
tagaacattacaacacaactcaaaatccttattattaaattaaaattcaaatccataacatattatgtttagaaagactacataaagagataatccatag |
17928546 |
T |
|
| Q |
213 |
caataaacccaaacatcgatgtcacaatgataaaaaccacataaaatctcatgaatttaaacataaaacc |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17928545 |
caataaacccaaacatcgatgtcacaatgataaaaaccacataaaatctcatgaagttaaacataaaacc |
17928476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University