View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_91 (Length: 295)
Name: NF17651_low_91
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 31127356 - 31127093
Alignment:
| Q |
18 |
atctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattcc |
117 |
Q |
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| T |
31127356 |
atctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattcc |
31127257 |
T |
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| Q |
118 |
aacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31127256 |
aacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggc-gagtcctcttacttcagcagcagcttcttttaaccgtcgctctgat |
31127158 |
T |
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| Q |
218 |
ccaacatttaatattttcttgactttccatagaaatggaatcgctgcatttaacctctctctgct |
282 |
Q |
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| T |
31127157 |
ccaacatttaatattttcttcactttccatagaaatggaatcgctgcatttaacctctcactgct |
31127093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 31078038 - 31077796
Alignment:
| Q |
18 |
atctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattcc |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| || |||| || ||| | ||||||| |
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| T |
31078038 |
atctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattcc |
31077939 |
T |
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| Q |
118 |
aacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgat |
217 |
Q |
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| T |
31077938 |
aaagttgctttttctttaagctcttttttcttttccctaacgattcttgtagc-aagtcctcttacttcagcgacggcttctttcaatcgtcgctc-gat |
31077841 |
T |
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| Q |
218 |
-ccaacatttaatattttcttgactttccatagaaatggaatcgc |
261 |
Q |
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| T |
31077840 |
ccctatgtttaatattttcttcactttccatatcaatggaatcgc |
31077796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 43 - 282
Target Start/End: Complemental strand, 31129011 - 31128773
Alignment:
| Q |
43 |
attacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcct |
142 |
Q |
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|||||||||||||| |||||||||| |||||||| | |||| || ||||| ||||||| |||||||||||||| |||||||||| ||| ||| | |
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| T |
31129011 |
attacaatatcaactgcaaaagattcttctgaatgtgcgtaactcaagcgtcgtggtagaataaccaatgattccaacactgatttttctacaaactctt |
31128912 |
T |
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| Q |
143 |
ttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgatccaacatttaatattttcttgactt |
242 |
Q |
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| T |
31128911 |
ttttcttttccctaacgattcttgtggc-gagtcctcttacttcaacgacggcttcttttagccgtttcttggatccaacatttaatattttcttcactt |
31128813 |
T |
|
| Q |
243 |
tccatagaaatggaatcgctgcatttaacctctctctgct |
282 |
Q |
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| T |
31128812 |
tccatagaaatggaatggcatcatttaacctctcgctgct |
31128773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 31132064 - 31131826
Alignment:
| Q |
18 |
atctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattcc |
117 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| |||||||||||||| || | |||||||| |||||| |
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| T |
31132064 |
atctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaaaatcgcgacaaaatatccaccgattcc |
31131965 |
T |
|
| Q |
118 |
aacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgat |
217 |
Q |
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|| | | ||||||| |||||| ||||||||||||||||| ||| ||||||| ||| || ||||||||||| |||||||||| ||||||||||| | | |
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| T |
31131964 |
aaggtttccttttctttaagctcttttttcttttccctaacaatttttgtggc-gagcccccttacttcagcgacagcttctttcaaccgtcgctcgggt |
31131866 |
T |
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| Q |
218 |
ccaacatttaatattttcttgactttccatagaaatggaa |
257 |
Q |
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|||| |||| | ||| || |||||||||| |||||||| |
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| T |
31131865 |
ccaatgtttaggaattttttcactttccataaaaatggaa |
31131826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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