View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_92 (Length: 287)
Name: NF17651_low_92
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_92 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 48237015 - 48236742
Alignment:
| Q |
1 |
ttcaacttgcacagatttgaaaaataaatacaaaaagcaaatgacannnnnnncgaaatcaaattttttgatgtaaaacaataatttttcttgttaccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48237015 |
ttcaacttgcacagatttgaaaaataaatacaaaaagcaaatgacatttttttcgaaatcaaattttttgatgtaaaacaataatttttcttgttaccag |
48236916 |
T |
|
| Q |
101 |
gcagaacaaattcgtagatggaaagaggaagagggacgaaaggttgtggaagttaggttatctcaggaggcagctctagcaatagcagaaagggagaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236915 |
gcagaacaaattcgtagatggaaagaggaagagggacgaaaggttgtggaagttaggttatctcaggaggcagctctagcaatagcagaaagggagaagg |
48236816 |
T |
|
| Q |
201 |
ctaaagccaaagctgcattggaagcagcagaggaagccaagaggaaggctgaacaggaggcacaaagaagaaag |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236815 |
ctaaagccaaagctgcattggaagcagcagaggaagccaagaggaaggctgaacaggaggcacaaagaagaaag |
48236742 |
T |
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