View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17651_low_93 (Length: 283)
Name: NF17651_low_93
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17651_low_93 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 42355189 - 42354926
Alignment:
| Q |
1 |
tttgaactcattaaaagtccacaaacaaaaccatcaccagaagttagaccaaggaatggaaactgagatggtgttccataaactatggctgagttcattc |
100 |
Q |
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| T |
42355189 |
tttgaactcattaaaagtccacaaacaaaaccatcaccagaagttagaccaaggaatggaaactgagatggtgttccataaactatggctgagttcattc |
42355090 |
T |
|
| Q |
101 |
cataacatgtcacagtgtgagatccatctgatttcaagccacagaaagcagaacctttatctccataagaaacagcaattgatgacatggaaccaagacc |
200 |
Q |
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| T |
42355089 |
cataacatgtcacagtgtgagatccatctgatttcaagccacagaaagcagaacctttatctccataagaaacagcaattgatgacatggaaccaagacc |
42354990 |
T |
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| Q |
201 |
agttacttttgaccataaccatgaaaaaacaacaacctcaaataaaatagtattcaaaaggtag |
264 |
Q |
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| T |
42354989 |
agttacttttgaccataaccatgaaaaaacaacaacctcaaataaaatagtattcaaaaggtag |
42354926 |
T |
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Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 25374393 - 25374583
Alignment:
| Q |
9 |
cattaaaagtccacaaacaaaaccatcaccagaagttagaccaaggaatggaaactgagatggtgttccataaactatggctgagttcattccataacat |
108 |
Q |
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||||| ||| ||||||||||| |||||||||| ||||| ||| | |||| || || | ||||||| |||| | ||| |||||||| |||||||||| |
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| T |
25374393 |
cattagaagaccacaaacaaatccatcaccagcggttaggccatgaaatgagaaatgggttggtgtttcatagattatagctgagttggatccataacat |
25374492 |
T |
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| Q |
109 |
gtcacagtgtgagatccatctgatttcaagccacagaaagcagaacctttatctccataagaaacagcaattgatgacatggaaccaagac |
199 |
Q |
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| T |
25374493 |
gtcacagtatgagatccatctgatttcaaaccacaaaaaactgagcctttttcaccatatgagattgcaatggatgacatggaaccaagac |
25374583 |
T |
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