View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17651_low_96 (Length: 279)

Name: NF17651_low_96
Description: NF17651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17651_low_96
NF17651_low_96
[»] chr7 (12 HSPs)
chr7 (9-266)||(4864562-4864819)
chr7 (9-223)||(4711285-4711499)
chr7 (9-229)||(4637528-4637748)
chr7 (12-226)||(4654173-4654387)
chr7 (9-223)||(4845213-4845427)
chr7 (10-204)||(4673402-4673596)
chr7 (9-229)||(4696379-4696599)
chr7 (9-226)||(4644372-4644586)
chr7 (116-226)||(4663367-4663477)
chr7 (27-224)||(4783051-4783251)
chr7 (27-224)||(4815480-4815680)
chr7 (140-224)||(4667617-4667701)
[»] chr4 (1 HSPs)
chr4 (178-224)||(18925115-18925161)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 266
Target Start/End: Complemental strand, 4864819 - 4864562
Alignment:
Q  9 gataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864819 gataatattgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 4864720  T
Q  109 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4864719 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 4864620  T
Q  209 ttatcaaaactttgaaccttcgaaagcannnnnnncagttgaagtaaacaacaaaatt 266  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  4864619 ttatcaaaactttgaaccttcgaaagcatttttttcagttgaagtaaacaacaaaatt 4864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 4711285 - 4711499
Alignment:
Q  9 gataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 108  Q
    ||||||| |||||||  |||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||  ||| || ||||| ||||    
T  4711285 gataatattgataactcaaatctctttaccttcattgaaccaaaaaccacaaacccatctcttaaatcatcacctaattccctttccaatatcgatattc 4711384  T
Q  109 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 208  Q
    ||  |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||   | ||||||||| || | ||||||||||||||||| ||    
T  4711385 cactcacaaccgcgcgtatctctctctcaaatttcacatactcattttctagcatcactaacacccctgtttttattagccttcatttttacccaacttc 4711484  T
Q  209 ttatcaaaactttga 223  Q
     || |||||||||||    
T  4711485 ataccaaaactttga 4711499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 4637748 - 4637528
Alignment:
Q  9 gataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 108  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||   |  | ||| ||||   ||||| ||| || |||    
T  4637748 gataatattaataacaaaaatctctttactttcattgaaccaaaaaccacaaacccatcttttaatgtacaagctaattccctctcaaatatccaagttc 4637649  T
Q  109 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 208  Q
    ||||||||  ||| ||| | |||||||||| ||||||||| |||||||||| |||||||| |||  |||||||| ||||||||||||||||||| |||||    
T  4637648 catacacacacgcacgtgtttctctctcaaatttcacatactcattttctagcatcactaattccactgtttttcttcgtcttcatttttaccctacatc 4637549  T
Q  209 ttatcaaaactttgaaccttc 229  Q
    |||||||||||||||||||||    
T  4637548 ttatcaaaactttgaaccttc 4637528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 4654387 - 4654173
Alignment:
Q  12 aatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccat 111  Q
    |||| ||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||| |||| ||| |||||||   ||||| |   |||||||||    
T  4654387 aatattgataacaaaaatatctttactttcattgaaccaaaaaccacgaacccatctcttacaacaccacgtagttccctctcaaatactcaaattccat 4654288  T
Q  112 acacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatctta 211  Q
     ||||||||| |||||||||||||||  ||||||||| |||||||||| |||||||| ||| |||||||||   || |||||||||||||| || || ||    
T  4654287 tcacaaccgcacgtatctctctctcatatttcacatactcattttctaacatcactacttcccctgtttttaaccgccttcatttttaccctacttcgta 4654188  T
Q  212 tcaaaactttgaacc 226  Q
    |||||| ||||||||    
T  4654187 tcaaaaatttgaacc 4654173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 4845213 - 4845427
Alignment:
Q  9 gataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 108  Q
    ||||||| |||||||  |||||||||||| |||||||||| |||||||||||| |||||| ||||| |||| |||| ||||  ||| || ||| ||||||    
T  4845213 gataatattgataactcaaatctctttaccttcattgaaccaaaaaccacaaatccatcttttaaatcatctcctaattccctttccaatatccaaattc 4845312  T
Q  109 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 208  Q
    ||| ||||||||||| ||||||| |||||| ||||||||| |||||||||| |||  ||||||| ||||||||| |||| ||||||||||||||||| ||    
T  4845313 cattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcattcctagttcccctgtttttattcgccttcatttttacccaacttc 4845412  T
Q  209 ttatcaaaactttga 223  Q
     || || ||||||||    
T  4845413 ataccagaactttga 4845427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 204
Target Start/End: Complemental strand, 4673596 - 4673402
Alignment:
Q  10 ataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattcc 109  Q
    |||||| | |||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||  ||||| ||||   ||||| ||| || ||||    
T  4673596 ataatattaataacacaaatctctttactttcattgaaccaaaaaccacatacccatctcttacaacacaacctaattccctctcaaatatccaagttcc 4673497  T
Q  110 atacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaa 204  Q
    |||||||  ||| ||| | |||||||||| ||||||||| |||||||||| |||||||| |||  |||||||| |||| ||||||||||||||||    
T  4673496 atacacacacgcacgtgtttctctctcaaatttcacatactcattttctagcatcactaattccactgtttttcttcgccttcatttttacccaa 4673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 4696379 - 4696599
Alignment:
Q  9 gataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 108  Q
    ||||||| |||||||| ||| |||||| | |||| ||||| ||||||||||||| ||||||||| || | ||||||   ||   ||||| ||| ||||||    
T  4696379 gataataatgataacacaaaactcttttccttcaatgaaccaaaaaccacaaacacatctcttacaataccacctaacaccctctcaaatatccaaattc 4696478  T
Q  109 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 208  Q
    ||| ||||||||| ||| |||||||||||| ||||||||| || ||| ||| |||||||| ||| ||||||||| |||| |||||||||||||| || ||    
T  4696479 cattcacaaccgcacgtgtctctctctcaaatttcacatactcttttcctagcatcactacttcccctgtttttcttcgccttcatttttacccgacttc 4696578  T
Q  209 ttatcaaaactttgaaccttc 229  Q
     || | |||||||||||||||    
T  4696579 gtaccgaaactttgaaccttc 4696599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 4644586 - 4644372
Alignment:
Q  9 gataatactgataacaaaaatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattc 108  Q
    ||||||| |||||||| ||| ||||||||||||||||||| ||||||||| || ||||||| ||||||||||| ||  ||| |   |||  ||  | |||    
T  4644586 gataataatgataacacaaaactctttactttcattgaaccaaaaaccactaatccatctcctaaaacatcacttaaatcccc---aaatttcacagttc 4644490  T
Q  109 catacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatc 208  Q
    ||||||||  ||| ||| ||||| |||||| ||| ||||| |||||||||| |||||||  ||| ||||||||| |||| ||| ||||||||||  ||||    
T  4644489 catacacacacgcacgtgtctctttctcaaattttacatactcattttctagcatcactgtttcccctgtttttcttcgcctttatttttaccctgcatc 4644390  T
Q  209 ttatcaaaactttgaacc 226  Q
     |||||||| ||||||||    
T  4644389 gtatcaaaattttgaacc 4644372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 4663477 - 4663367
Alignment:
Q  116 aaccgcgcgtatctctctctcaagtttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatcttatcaa 215  Q
    |||||| |||||||| ||||||| ||||||||| |||||| |||||||| ||||||  ||||||||| |||| |||||||||||| ||||||||||| ||    
T  4663477 aaccgcacgtatctcgctctcaaatttcacatactcatttcctaccatccctagttgccctgtttttcttcgccttcatttttactcaacatcttataaa 4663378  T
Q  216 aactttgaacc 226  Q
    |||||||||||    
T  4663377 aactttgaacc 4663367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 4783051 - 4783251
Alignment:
Q  27 aatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccgcgcgta 126  Q
    ||||||||| | |||||||||| |||||  |||||||||||||||||||||  ||||| ||||   ||||| ||| ||||||||| ||||||||  |||     
T  4783051 aatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaacaaaacctaattccctctcaaatatccaaattccattcacaaccgtacgtg 4783150  T
Q  127 tctctctctcaagtttcacatattcattttct---accatcactagttcgcctgtttttgttcgtcttcatttttacccaacatcttatcaaaactttga 223  Q
     ||||||||||| ||||||||| |||||||||   | ||||||||  ||  || ||||| |||| ||||||||||||||||| || |||||||| |||||    
T  4783151 cctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcatttttacccaacttcatatcaaaattttga 4783250  T
Q  224 a 224  Q
    |    
T  4783251 a 4783251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 4815480 - 4815680
Alignment:
Q  27 aatctctttactttcattgaacaaaaaaccacaaacccatctcttaaaacatcacctagttccgcttcaaacatcgaaattccatacacaaccgcgcgta 126  Q
    ||||||||| | |||||||||| |||||  |||||||||||||||||||||  ||||| ||||   ||||| | | ||||||||| ||||||||  |||     
T  4815480 aatctcttttccttcattgaaccaaaaaatacaaacccatctcttaaaacaaaacctaattccctctcaaatacccaaattccattcacaaccggacgtg 4815579  T
Q  127 tctctctctcaagtttcacatattcattttct---accatcactagttcgcctgtttttgttcgtcttcatttttacccaacatcttatcaaaactttga 223  Q
     ||||||||||| ||||||||| |||||||||   | ||||||||  ||  || ||||| |||| ||||||||||||||||| || |||||||| |||||    
T  4815580 cctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcatttttacccaacttcatatcaaaattttga 4815679  T
Q  224 a 224  Q
    |    
T  4815680 a 4815680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 4667701 - 4667617
Alignment:
Q  140 tttcacatattcattttctaccatcactagttcgcctgtttttgttcgtcttcatttttacccaacatcttatcaaaactttgaa 224  Q
    ||||||||  ||||||||| | |||| ||||   ||||||||| |||| || ||||||||||||||||| |||||||||||||||    
T  4667701 tttcacattctcattttctccgatcaatagtggccctgtttttcttcgcctccatttttacccaacatcgtatcaaaactttgaa 4667617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 18925115 - 18925161
Alignment:
Q  178 tttttgttcgtcttcatttttacccaacatcttatcaaaactttgaa 224  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  18925115 tttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 18925161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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