View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17652_high_1 (Length: 992)
Name: NF17652_high_1
Description: NF17652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17652_high_1 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 498 - 977
Target Start/End: Original strand, 40800724 - 40801204
Alignment:
| Q |
498 |
gttccacagaggaagccacttcttctaacggaacgaattacattcaatatttcttgatgattgaagaact-tttttgtgttctatttcctatttactctt |
596 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
40800724 |
gttccatagaggaagccacttcttctaacggtacgaattacatgcaatatttcttgatgattgaagaactgtttttgtattctatttcctttttactctt |
40800823 |
T |
|
| Q |
597 |
cttggttaatacaaattcagatataatgggaaatgttccgcattgatagagaagctcctcatatataggatgattgccaaatttttctccatattatctc |
696 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40800824 |
cttggttaatacaaattcagatataatgggaaatgttccgcattgatagagaagctcctcatatataggatgactgccaaatttttctccatattatctc |
40800923 |
T |
|
| Q |
697 |
tcggtctctttctaatccttttatgttgttgtttgcatgtgatttgagtccttattcgataattgtcccaaagggtgaaaggaaacgacgaagaggaaag |
796 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40800924 |
tcggtctctttctaatccttttatgttgttgtttgcatgtgatttgagtccttattccataattgtcgcaaagggtgaaaggaaacgacgaagaggaaag |
40801023 |
T |
|
| Q |
797 |
gaagatggttacatattagaaaatatggttttaagatgtttgaagttttcaggtatgtttgatgctcaataaatatcaaacttcctttaacataaaaggt |
896 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40801024 |
gaagatggttacatattagtaaatatggtttaaagatgcttgaagttttcaagtatatttgatgctcaataaatatctaacttcctttaacataaaaggt |
40801123 |
T |
|
| Q |
897 |
ggttatgtatcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagt |
977 |
Q |
| |
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| T |
40801124 |
ggttacgtatcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagt |
40801204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 175 - 502
Target Start/End: Original strand, 40799391 - 40799719
Alignment:
| Q |
175 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttagcaaatttgaaaggccttttc |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40799391 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttaggaaatttgaaaggccttttc |
40799490 |
T |
|
| Q |
275 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcaaaaagttatgcctcg |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40799491 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcagaaagttatgcgtcg |
40799590 |
T |
|
| Q |
375 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttg-ttttaaaaatcatat |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40799591 |
ttggcaatttccttttaaatttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgcttttaaaaatcatat |
40799690 |
T |
|
| Q |
474 |
tccttctttgttgtgttaattattgttcc |
502 |
Q |
| |
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||||||||||||||||||||| ||||||| |
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| T |
40799691 |
tccttctttgttgtgttaattgttgttcc |
40799719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 40799220 - 40799328
Alignment:
| Q |
4 |
gagagagatgaagaaggggaaaagggaggaagaagatggaacaatttgatgtagcctattttcctccaccattaattaaagtgtttaaggtaaatgcaat |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40799220 |
gagagagatgaagaaggggaaaagggaggaagaagatggaacaacttgatgtagcctattttcctcgaccattaattaaagtgtttaaggtaaatgcaat |
40799319 |
T |
|
| Q |
104 |
tatataggc |
112 |
Q |
| |
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||||||||| |
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| T |
40799320 |
tatataggc |
40799328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 8e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 394 - 649
Target Start/End: Complemental strand, 2249574 - 2249317
Alignment:
| Q |
394 |
tttccttcaatttacctttactacatttactttaaacaattgcatacacgcattccttatttttgttttaaa-aatcatattccttctttgttgtgttaa |
492 |
Q |
| |
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|||||||||||||| | |||| | ||||||| |||||| ||||||||||| |||||||| || ||| |||| || |||| |||||||||||| |||| |
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| T |
2249574 |
tttccttcaatttaacattaccatatttactataaacacttgcatacacgtgttccttatcttagttgtaaagaagtgtatttcttctttgttgttttaa |
2249475 |
T |
|
| Q |
493 |
ttattgttccacagaggaagccacttcttctaacggaacgaattacattcaatatttcttgatgattgaagaacttttt-tgtgttctatttcctattta |
591 |
Q |
| |
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|| |||||||| | ||||||||||||||| | | || |||||| || |||| |||||| |||||||||| ||| ||| ||| |||||||| ||| || |
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| T |
2249474 |
tttttgttccataaaggaagccacttcttggagcataatgaattatatgcaatttttcttcatgattgaagcactatttctgtactctatttcttatcta |
2249375 |
T |
|
| Q |
592 |
ctcttcttggttaatacaaattcagatataatgggaaatgttccgcattgatagagaa |
649 |
Q |
| |
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||||||| |||||||| |||||| |||||||||| |||||||||||||| ||| |||| |
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| T |
2249374 |
ctcttctcggttaatataaattctgatataatggaaaatgttccgcatttatatagaa |
2249317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 714 - 827
Target Start/End: Complemental strand, 2249080 - 2248968
Alignment:
| Q |
714 |
cttttatgttgttgtttgcatgtgatttgagtccttattcgataattgtcccaaagggtgaaaggaaacgacgaagaggaaaggaagatggttacatatt |
813 |
Q |
| |
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||||||||||||| | | ||||| ||||||||||| ||| |||||||| ||||||||||||||| || ||||||||||||||||| ||||||||| |
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| T |
2249080 |
cttttatgttgttttctccatgtcatttgagtcctaatttcataattgttgcaaagggtgaaaggagac-acgaagaggaaaggaaggcagttacatatc |
2248982 |
T |
|
| Q |
814 |
agaaaatatggttt |
827 |
Q |
| |
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|| ||||||||||| |
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| T |
2248981 |
agtaaatatggttt |
2248968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 853 - 912
Target Start/End: Complemental strand, 2248971 - 2248911
Alignment:
| Q |
853 |
gtttgatgctcaataaatatcaaac-ttcctttaacataaaaggtggttatgtatcagtaa |
912 |
Q |
| |
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||||||||||||||||||||| ||| ||| |||||| |||||||||||| |||||||||| |
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|
| T |
2248971 |
gtttgatgctcaataaatatctaactttcgtttaacgaaaaaggtggttacgtatcagtaa |
2248911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 904 - 977
Target Start/End: Complemental strand, 18701846 - 18701773
Alignment:
| Q |
904 |
tatcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagt |
977 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701846 |
tatcagtaattgggaaatgtataagaatatttacttagataatattttatttgatttctccaaatttggtaagt |
18701773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 463 - 562
Target Start/End: Complemental strand, 51035649 - 51035550
Alignment:
| Q |
463 |
aaaaatcatattccttctttgttgtgttaattattgttccacagaggaagccacttcttctaacggaacgaattacattcaatatttcttgatgattgaa |
562 |
Q |
| |
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||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||| || | || || |||||| |||| ||| || ||||||||| |
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|
| T |
51035649 |
aaaaaacatattccttctttgtagtgttaatttttgttccatagaggaagccacttcttatagcagagcgcattacaagcaatttttattcatgattgaa |
51035550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 714 - 847
Target Start/End: Original strand, 9813613 - 9813743
Alignment:
| Q |
714 |
cttttatgttgttgtttgcatgtgatttgagtccttattcgataattgtcccaaagggtgaaaggaaacgacgaagaggaaaggaagatggttacatatt |
813 |
Q |
| |
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|||||||| |||| | | ||||| ||||||||||| || |||||||| |||| ||||||||||||| | |||| |||||||| |||||||||| |
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| T |
9813613 |
cttttatgctgttttctccatgtcatttgagtcctagttacataattgttgcaaacggtgaaaggaaacaa---agagaaaaggaaggcggttacatatc |
9813709 |
T |
|
| Q |
814 |
agaaaatatggttttaagatgtttgaagttttca |
847 |
Q |
| |
|
| ||||||||||| |||||| |||||||||||| |
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| T |
9813710 |
aataaatatggtttgaagatgcttgaagttttca |
9813743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 12637 - 12557
Alignment:
| Q |
469 |
catattccttctttgttgtgttaattattgttccacagaggaagccacttcttctaacggaacgaattacattcaatatttc |
550 |
Q |
| |
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||||||||||||| || ||||||||| |||| ||| | ||||||||||||||| || | || ||||||||| ||||| |||| |
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| T |
12637 |
catattccttcttcgtagtgttaatttttgt-ccataaaggaagccacttcttatagcagagcgaattacaatcaatttttc |
12557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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