View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17652_high_2 (Length: 385)
Name: NF17652_high_2
Description: NF17652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17652_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 8174669 - 8175012
Alignment:
| Q |
11 |
ttatactggtgggataattcttaaattaatgttggtattagttaacaaatataatagaaaattaaattgagaaccacttcattacaaaaatcaaacttca |
110 |
Q |
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| T |
8174669 |
ttatattggtgggataattcttaaattaatgttggtattagttaacaaatataatagaaaattaaattgagaaccacttcattacaaaaatcaaacttca |
8174768 |
T |
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| Q |
111 |
aaccaaatatgttgaatatgtatgtagttatgtacaaatcaattcatctcaactaatccctattgataacgaaatgattaaagcaaataggttttaagaa |
210 |
Q |
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| T |
8174769 |
a-ccagatatgttgaatatgtac----ttatgtacaaatcaattcatctcaactaatccctattgataacgaaatgattaaagcaaataggttttaagaa |
8174863 |
T |
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| Q |
211 |
gattcgtgctttcaataaacaattaggtttaattgttgtggtaaaataaacaaatatatgtgacnnnnnnnaacaaagctatatgcaaaatgggatcatg |
310 |
Q |
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| T |
8174864 |
gattcgtgctttcaataaacaattaggtttaattcttgtggtaaaataaacaaatatatgtgactttttttaacaaagctatatgcaaaatgggatcatg |
8174963 |
T |
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| Q |
311 |
cgctaaacatgaggttagtatgatggtgtcataatgttttaaaattttg |
359 |
Q |
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| T |
8174964 |
cgctaaacatgaggttagaatgatggtgtcataatgttttaaaattttg |
8175012 |
T |
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