View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17652_high_3 (Length: 346)
Name: NF17652_high_3
Description: NF17652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17652_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 69 - 346
Target Start/End: Complemental strand, 29209327 - 29209050
Alignment:
| Q |
69 |
gtattgttatgtgtgtgagtaaatgattttcatcttgtataggcttatgactatacaagtagttaattttagcaactaaaaaatagaacacattgcaatt |
168 |
Q |
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| T |
29209327 |
gtattgttatgtgtgtgagtaaatgattttcatcttgtataggcttatgactatacaagtagttaattttagtaactaaaaaatagaacacattgcaatt |
29209228 |
T |
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| Q |
169 |
agagaccactctatgttcagtaatctatactcaattacaaacaaattctgcatgaaattgtgctctttgttatgtgtatatgtcaagcaaactataatgc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29209227 |
agagaccactctatgttcagtaatctatactcaattacaaacagattctgcatgaaattgtgctctttgttatgtgtatatgtcaagcaaactataatgc |
29209128 |
T |
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| Q |
269 |
ttgtattaggggtcaaaagatttaaagaagcctcaacatctcaaaggataggaaaaccagagacaacaaacattaatt |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29209127 |
ttgtattaggggtcaaaagatttaaagaagcctcaacatctcaaaggataggaaaaccagagacaacaaacattaatt |
29209050 |
T |
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