View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17652_high_6 (Length: 225)
Name: NF17652_high_6
Description: NF17652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17652_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 29189268 - 29189483
Alignment:
| Q |
1 |
taccaatggttgacatctctcccccatcaatatggtcttcttccacaagcattcgtcatcctcttgctttttcattttgaaaagttgggaatggattgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29189268 |
taccaatggttgacatctctcccccatcaatatggtcttcttccacaagcattcgtcatcctcttgctttttcattttgaaaagttgggaatggattgcc |
29189367 |
T |
|
| Q |
101 |
ttgtagannnnnnngatgacattctttgaattagttggtaactcctctcgctgctttcttttgaagcaaatggtacatgaggtaatttccttgttggtcg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29189368 |
ttgtagatttttttgatgacattctttgaattagttggtaactcctctcgctgctttcttttgaagcaaatggtacatgaggtaatttccttgttggtcg |
29189467 |
T |
|
| Q |
201 |
taaaattaatattctt |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
29189468 |
taaaattaatattctt |
29189483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 42103760 - 42103567
Alignment:
| Q |
3 |
ccaatggttgacatctctcccccatcaatatggtcttcttccacaagcattcgtcatcctcttgctttttcattttgaaaagttgggaatggattgcctt |
102 |
Q |
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|||||||||||||| | |||||||||| ||||||||||||||||||||| | ||||| |||||||| |||||||| |||| | | ||||||||||||| |
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| T |
42103760 |
ccaatggttgacatttttcccccatcagtatggtcttcttccacaagcacttatcatcttcttgcttcttcattttcaaaatcttgcaatggattgcctt |
42103661 |
T |
|
| Q |
103 |
gtagannnnnnngatgacattctttgaattagttggtaactcctctcgctgctttcttttgaagcaaatggtacatgaggtaatttccttgttg |
196 |
Q |
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| T |
42103660 |
gtagattttcttgatgatattctttgagctcgttgataactcctctagcttctttgttttgagggaaatgatatatgagataattgccttgttg |
42103567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 27572790 - 27572845
Alignment:
| Q |
23 |
cccatcaatatggtcttcttccacaagcattcgtcatcctcttgctttttcatttt |
78 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||| ||| |||||||| |
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| T |
27572790 |
cccatcaatatggtcttcttccacaaacatctttcatcctctttcttcttcatttt |
27572845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 27743570 - 27743510
Alignment:
| Q |
18 |
tctcccccatcaatatggtcttcttccacaagcattcgtcatcctcttgctttttcatttt |
78 |
Q |
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|||| |||||||||||||||||||||||||| ||| |||||||||| ||| ||| |||| |
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| T |
27743570 |
tctcacccatcaatatggtcttcttccacaaacatctttcatcctctttcttcttcttttt |
27743510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 13150993 - 13150922
Alignment:
| Q |
7 |
tggttgacatctctcccccatcaatatggtcttcttccacaagcattcgtcatcctcttgctttttcatttt |
78 |
Q |
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|||||| ||| |||| ||||||||||||||||||||||| || ||| |||||||||| ||| |||||||| |
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| T |
13150993 |
tggttggcatttctcacccatcaatatggtcttcttccataaacatctttcatcctctttcttcttcatttt |
13150922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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