View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17652_high_7 (Length: 219)
Name: NF17652_high_7
Description: NF17652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17652_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 11759770 - 11759584
Alignment:
| Q |
18 |
agttttgtctcttaattaaaataaggatgagaagaagacaatcatgtaatgtaacaataaaacaaccaaattaaatttcaaaatttatttttatgggcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
11759770 |
agttttgtctcttaattaaaataaggatgagaagaagacaatcatgtaatgtaacaataaaacaaccaaattaaattttaaaatttatttttatgcgcgt |
11759671 |
T |
|
| Q |
118 |
gtaaaaaagtttaacagtatcgctatatacaaattaaattcttaaatttttagatcattgttgtataagttgttttgctagcctatg |
204 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11759670 |
gtaaaaaagttttacagtatcgttatatacaaattaaattcttaaatttttagatcattgttgtataagttgttttgctagcctatg |
11759584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University