View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17652_low_5 (Length: 252)
Name: NF17652_low_5
Description: NF17652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17652_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10981942 - 10982183
Alignment:
| Q |
1 |
ctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgct |
100 |
Q |
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| T |
10981942 |
ctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgct |
10982041 |
T |
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| Q |
101 |
tgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattattt |
200 |
Q |
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| T |
10982042 |
tgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaaggattattt |
10982141 |
T |
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| Q |
201 |
attcctaatggtattccatccattttctgtactggacctttg |
242 |
Q |
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| T |
10982142 |
attcctgatggtattccatccattttctgtactggacctttg |
10982183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 10968099 - 10968229
Alignment:
| Q |
111 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
210 |
Q |
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| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
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| Q |
211 |
g---tattccatccattttctgtactggacc |
238 |
Q |
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| T |
10968199 |
gaactactccatccattttttgtattggacc |
10968229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 11002265 - 11002413
Alignment:
| Q |
97 |
tgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggatt |
196 |
Q |
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| T |
11002265 |
tgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaaggggt |
11002364 |
T |
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| Q |
197 |
atttattcctaatgg---tattccatccattttctgtactggacctttg |
242 |
Q |
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| T |
11002365 |
atgtgttcctgatggaacaactccatccattttttgtattggacctttg |
11002413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10968019 - 10968070
Alignment:
| Q |
1 |
ctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctga |
52 |
Q |
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|||||| |||||| ||||||||||| | | |||||||||||||||||||||| |
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| T |
10968019 |
ctcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctga |
10968070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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