View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17653_low_2 (Length: 435)
Name: NF17653_low_2
Description: NF17653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17653_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 2 - 417
Target Start/End: Complemental strand, 37161511 - 37161096
Alignment:
| Q |
2 |
tgcaagacgttctcactataacctctaaatgtatcaaaattgcaaacacgtccagggaagtgctgagaccaacaattgattaatgtttcaggaccacaaa |
101 |
Q |
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| T |
37161511 |
tgcaagacgttctcactataacctctaaatgtatcaaaattgcaaacacgtccagggaagtgctgagaccaacaattgattaatgtttcaggaccacaaa |
37161412 |
T |
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| Q |
102 |
agaggaagacgtcacattaagacattgagaatacggccacctatcttatatatccagcatcatatccattcatatgcgacttgggagcagacggactagc |
201 |
Q |
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| T |
37161411 |
agaggaagacgtcacattaagacattgagaatacggtcacctatcttatatatccagcatcatatccatttatatgcgacttgggagcagacggactagc |
37161312 |
T |
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| Q |
202 |
acagtagaggtgcagacagacttagggtagcatagtcaaggcttttggtccctaataaaaccaaacagttttgagcacaaggtgttcacttccctcttct |
301 |
Q |
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| T |
37161311 |
acagtagaggcgcagacggacttagggtggcatagtcaaggcttttggtccctaataaaaccaaacagttttgagcacaaggtgttcacttccctcttct |
37161212 |
T |
|
| Q |
302 |
ttcctttttcccttattgattgtgaatagaaaatgtttctgttacgtctactagttgcattctttgtgttgaggagccaagattgatttagaggtggaaa |
401 |
Q |
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| T |
37161211 |
ttcctttttcccttattgattgtgaatagaaaatgtttctgttacgtctactagttgcattctttgtgttgaggagccaagattgatttagaggtggaaa |
37161112 |
T |
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| Q |
402 |
acggatacttacctat |
417 |
Q |
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| T |
37161111 |
acggatacttacctat |
37161096 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 27486156 - 27486120
Alignment:
| Q |
14 |
tcactataacctctaaatgtatcaaaattgcaaacac |
50 |
Q |
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| T |
27486156 |
tcactatagtctctaaatgtatcaaaattgcaaacac |
27486120 |
T |
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