View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17653_low_3 (Length: 416)
Name: NF17653_low_3
Description: NF17653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17653_low_3 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 68884 - 68499
Alignment:
| Q |
16 |
catatatgcctgaaatatgacattggtttccttgttcgccatctttaaaacgaccccaaatatggttcaaagaacatgatggaattgtgatttgtaatta |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
68884 |
catatatgcctgaaatatgacactggtttccttgttcaccgtctttaaaacgaccccaaacatggttcaaagaacatgatggaatagtgatttgtaatta |
68785 |
T |
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| Q |
116 |
atcattttataacaaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacattttttctttaaacctt |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
68784 |
atcatttcataacaaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacatttttgctttaaacctt |
68685 |
T |
|
| Q |
216 |
tcatctcaaaactctttaatcgacaagaggactccctaactatctgcagttccaacttaaaattttcattcgggtattcttgtaaatgcacatgtccctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68684 |
tcatctcaaaactctttaatcgacaagaggactccctaactatctgcagttccaacttaaaattttcattcgggtattcttgtaaatgcacatgtccctt |
68585 |
T |
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| Q |
316 |
gtcaacaataattctcctcatttattccacaccacataggtccatcggttcaacctctgaaattgttacttccacaaattgtctct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68584 |
gtcaacaataattctcctcatttattccacaccacataggtccatcggttcaacctctgaaattgttacttccacaaattgtctct |
68499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 76727 - 76342
Alignment:
| Q |
16 |
catatatgcctgaaatatgacattggtttccttgttcgccatctttaaaacgaccccaaatatggttcaaagaacatgatggaattgtgatttgtaatta |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
76727 |
catatatgcctgaaatatgacactggtttccttgttcaccgtctttaaaacgaccccaaacatggttcaaagaacatgatggaatagtgatttgtaatta |
76628 |
T |
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| Q |
116 |
atcattttataacaaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacattttttctttaaacctt |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
76627 |
atcatttcataacaaagccaaacctccaacacgctcttttccaattcctctacaacccactacttgacaggaattaaaccacatttttgctttaaacctt |
76528 |
T |
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| Q |
216 |
tcatctcaaaactctttaatcgacaagaggactccctaactatctgcagttccaacttaaaattttcattcgggtattcttgtaaatgcacatgtccctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76527 |
tcatctcaaaactctttaatcgacaagaggactccctaactatctgcagttccaacttaaaattttcattcgggtattcttgtaaatgcacatgtccctt |
76428 |
T |
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| Q |
316 |
gtcaacaataattctcctcatttattccacaccacataggtccatcggttcaacctctgaaattgttacttccacaaattgtctct |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76427 |
gtcaacaataattctcctcatttattccacaccacataggtccatcggttcaacctctgaaattgttacttccacaaattgtctct |
76342 |
T |
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