View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17653_low_4 (Length: 393)
Name: NF17653_low_4
Description: NF17653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17653_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 44460985 - 44461357
Alignment:
| Q |
1 |
tcatctatactctctttctgtaactaaccttatctctacaccagcatctattatttggtcaatccctcgacacctacatgttttcttcctgattgcagtt |
100 |
Q |
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| T |
44460985 |
tcatctatactctctttctgtaactaaccttatctctacaccagcatctattatttggtcaatccctcgacacctacatgttttcttcctgattgcagtt |
44461084 |
T |
|
| Q |
101 |
aatctttagtgggccagggttgcaggtttaaacatgcaagccttcttcatcttggacccgacctgtactgtatttgagtctatggtatggtcctattaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461085 |
aatctttagtgggccagggttgcaggtttaaacatgcaagccttcttcatcttggacccgacctgtactgtatttgagtctatggtatggt--------- |
44461175 |
T |
|
| Q |
201 |
aaaccatagaacacaatgagtatgaaatgtacctttcatagttgcatatcctgtggtttattcaagtgtgatgttgtaaaccattgatatttatttgcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461176 |
-aaccatagaacacaatgagtatgaaatgtacctttcatacttgcatatcctgtggtttattcaagtgtgatgttgtaaaccattgatatttatttgcta |
44461274 |
T |
|
| Q |
301 |
aaatttagtatactgnnnnnnnagaagacggtgtatttcggctcgactaattgcatccatcgttcgtctattccaatcctatg |
383 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44461275 |
aaatttagtatactgtttttttagaagacggtgtatttcggctcgactaattgcatctatcgttcgtctattccaatcctatg |
44461357 |
T |
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