View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17653_low_8 (Length: 229)
Name: NF17653_low_8
Description: NF17653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17653_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 33035559 - 33035340
Alignment:
| Q |
7 |
acattgtggagctatctaaagtacttttgaagtgggggagagggacaaagaaagagaaggctagagaatcattggtgggaataatgaccacacagtgcac |
106 |
Q |
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| T |
33035559 |
acattgtggagctatctaaagtacttttgaagtgggggagagggacaaagaaagagaaggctagagaatcattggtgggaataatgaccacacagtgcac |
33035460 |
T |
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| Q |
107 |
acactcttgtttgtttaattttggttcttccatatactatctacaataaatccaattgtagattgaacttaggaagtgttaaaaagtagtttttacttgt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33035459 |
acactcttgtttgtttaattttggttcttccatatactatctacaataaatccaattgtagattgaacttaggaagtgttaaaaagtagttgttacttgt |
33035360 |
T |
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| Q |
207 |
tactactagttagctttctt |
226 |
Q |
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|||||||||||| ||||||| |
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| T |
33035359 |
tactactagttaactttctt |
33035340 |
T |
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