View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17653_low_9 (Length: 228)
Name: NF17653_low_9
Description: NF17653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17653_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 53699288 - 53699483
Alignment:
| Q |
15 |
cagagaccattcagccataagcttgaatatgccaaattgaaaagatgcaaatcaaagaaatgagttcaaacatctttccaccataagcttgaataggcca |
114 |
Q |
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| T |
53699288 |
cagagaccattcagccataagcttgaatatgccaaattgaaaagatgcaaatcaaagaaatgagttcaaacatctttccaccataagcttgaataggcca |
53699387 |
T |
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| Q |
115 |
attcaaataaatctttcaaggtaggaggatattgataaaatgaccgcttcaatata-ttattaactgttgttgttcgagaaagtctttgataattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
53699388 |
attcaaataaatctttcaaggtaggaggatattgataaaatgaccgcttcaatatatttattaactgttgttgttcgagaaagtctttgataattt |
53699483 |
T |
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