View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17654_high_12 (Length: 249)

Name: NF17654_high_12
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17654_high_12
NF17654_high_12
[»] chr8 (6 HSPs)
chr8 (16-156)||(550814-550954)
chr8 (16-96)||(23422058-23422137)
chr8 (23-82)||(6219918-6219977)
chr8 (106-138)||(2234385-2234417)
chr8 (106-150)||(4757335-4757379)
chr8 (106-138)||(10334358-10334390)
[»] chr4 (4 HSPs)
chr4 (23-74)||(29211814-29211865)
chr4 (106-150)||(5814516-5814560)
chr4 (106-150)||(8712700-8712744)
chr4 (23-83)||(31932509-31932569)
[»] chr7 (8 HSPs)
chr7 (106-150)||(38277014-38277058)
chr7 (105-138)||(15017282-15017315)
chr7 (23-72)||(26638426-26638475)
chr7 (23-72)||(26638503-26638552)
chr7 (105-138)||(37593301-37593334)
chr7 (106-138)||(21990844-21990876)
chr7 (106-150)||(28664848-28664892)
chr7 (106-150)||(45482234-45482278)
[»] chr2 (3 HSPs)
chr2 (23-82)||(15920122-15920181)
chr2 (106-150)||(11798430-11798474)
chr2 (106-138)||(44942468-44942500)
[»] chr1 (5 HSPs)
chr1 (23-73)||(6158844-6158894)
chr1 (105-150)||(8737520-8737565)
chr1 (106-150)||(3232958-3233002)
chr1 (106-150)||(14265454-14265498)
chr1 (22-82)||(32301586-32301646)
[»] chr6 (3 HSPs)
chr6 (105-150)||(6419764-6419809)
chr6 (106-150)||(2304745-2304789)
chr6 (106-150)||(8693561-8693605)
[»] chr5 (3 HSPs)
chr5 (109-150)||(39531647-39531688)
chr5 (106-138)||(2555257-2555289)
chr5 (106-150)||(6281214-6281258)
[»] chr3 (4 HSPs)
chr3 (23-64)||(44984672-44984713)
chr3 (106-138)||(3312626-3312658)
chr3 (106-150)||(19861194-19861238)
chr3 (106-150)||(53155345-53155389)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 550814 - 550954
Alignment:
Q  16 ataagcttacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattgattggattcacattaggtcaaagactcaaagcta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  550814 ataagcttacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattgattggattcacattaggtcaaagactcaaaacta 550913  T
Q  116 atatttcaagctgaatcaaataagcattgcactaaagtgag 156  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  550914 gtatttcaagctgaatcaaataagcattgcactaaagtgag 550954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 23422137 - 23422058
Alignment:
Q  16 ataagcttacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattgattggattcacatta 96  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||    
T  23422137 ataagcctacaaatacgact-tatttaagtgttcaaaatactcatgtctttgaatctgtaacattgattggattcacatta 23422058  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 6219918 - 6219977
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattga 82  Q
    |||||||| ||||||||| |||| | ||||||||||||||||||||||||| ||| ||||    
T  6219918 tacaaatatgactatattcaagtatacaaaatactcatgttttcggatctgcaacgttga 6219977  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 2234385 - 2234417
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataa 138  Q
    ||||||||||||||||||| |||||||||||||    
T  2234385 ctcaaagctaatatttcaacctgaatcaaataa 2234417  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 4757379 - 4757335
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  4757379 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 4757335  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 10334390 - 10334358
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataa 138  Q
    ||||||||||||||||||| |||||||||||||    
T  10334390 ctcaaagctaatatttcaatctgaatcaaataa 10334358  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29211865 - 29211814
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgt 74  Q
    |||||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  29211865 tacaaatacgactataattaagtgttcgaaatactcatactttcggatctgt 29211814  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 5814560 - 5814516
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| || ||||||||    
T  5814560 ctcaaagctaatctttcaacctgaatcaaataaacactgcactaa 5814516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 8712744 - 8712700
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  8712744 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 8712700  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 31932569 - 31932509
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattgat 83  Q
    |||||||| || |||||| |||  |||||||||||||||||| ||| |||||||| |||||    
T  31932569 tacaaatatgattatattcaagccttcaaaatactcatgtttccggttctgtaacgttgat 31932509  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 38277058 - 38277014
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||||||||||  |||||||||||| |||||||||||    
T  38277058 ctcaaagctaatatttcaacatgaatcaaataaacattgcactaa 38277014  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 15017282 - 15017315
Alignment:
Q  105 actcaaagctaatatttcaagctgaatcaaataa 138  Q
    |||||||||||||||||||| |||||||||||||    
T  15017282 actcaaagctaatatttcaacctgaatcaaataa 15017315  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 26638426 - 26638475
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatct 72  Q
    |||||||| || |||||| |||||| |||||||||||||| |||||||||    
T  26638426 tacaaatatgaatatattcaagtgtccaaaatactcatgtcttcggatct 26638475  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 26638503 - 26638552
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatct 72  Q
    |||||||| || |||||| |||||| |||||||||||||| |||||||||    
T  26638503 tacaaatatgaatatattcaagtgtccaaaatactcatgtcttcggatct 26638552  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 37593334 - 37593301
Alignment:
Q  105 actcaaagctaatatttcaagctgaatcaaataa 138  Q
    |||||||||||||||||||| |||||||||||||    
T  37593334 actcaaagctaatatttcaacctgaatcaaataa 37593301  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 21990876 - 21990844
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataa 138  Q
    |||||||||||| ||||||||||||||||||||    
T  21990876 ctcaaagctaatctttcaagctgaatcaaataa 21990844  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 28664848 - 28664892
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| || ||||||||    
T  28664848 ctcaaagctaatctttcaacctgaatcaaataaacactgcactaa 28664892  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 45482278 - 45482234
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  45482278 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 45482234  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 15920181 - 15920122
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattga 82  Q
    |||||||| ||||||||| |||| ||| |||||||||||||| |||||||| ||| ||||    
T  15920181 tacaaatatgactatattcaagtcttcgaaatactcatgtttccggatctgcaacgttga 15920122  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 11798430 - 11798474
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  11798430 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 11798474  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 44942500 - 44942468
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataa 138  Q
    |||||||||||| ||||||||||||||||||||    
T  44942500 ctcaaagctaatctttcaagctgaatcaaataa 44942468  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 6158844 - 6158894
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctg 73  Q
    |||||||| ||||||||| |||| |||| ||||||||||| ||||||||||    
T  6158844 tacaaatatgactatattcaagtcttcagaatactcatgtcttcggatctg 6158894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 8737565 - 8737520
Alignment:
Q  105 actcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    ||||||||||||| |||||| ||||||||||||| || ||||||||    
T  8737565 actcaaagctaatctttcaacctgaatcaaataaacactgcactaa 8737520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 3233002 - 3232958
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  3233002 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 3232958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 14265498 - 14265454
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  14265498 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 14265454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 32301646 - 32301586
Alignment:
Q  22 ttacaaatacgactatatttaagtgttcaaaatactcatgttttcggatctgtaacattga 82  Q
    ||||||||| ||| ||||| ||||   ||||||||| ||||||||||||||| ||||||||    
T  32301646 ttacaaatatgaccatattcaagtcaccaaaatacttatgttttcggatctgcaacattga 32301586  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 6419764 - 6419809
Alignment:
Q  105 actcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    ||||||||||||| |||||| ||||| ||||||| |||||||||||    
T  6419764 actcaaagctaatctttcaacctgaaccaaataaacattgcactaa 6419809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 2304745 - 2304789
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| || ||||||||    
T  2304745 ctcaaagctaatctttcaacctgaatcaaataaacactgcactaa 2304789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 8693561 - 8693605
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| || ||||||||    
T  8693561 ctcaaagctaatctttcaacctgaatcaaataaacactgcactaa 8693605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 39531647 - 39531688
Alignment:
Q  109 aaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    ||||||||| |||||| ||||||||||||||||||| |||||    
T  39531647 aaagctaatctttcaacctgaatcaaataagcattgtactaa 39531688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 2555257 - 2555289
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataa 138  Q
    ||||||||||||||||||| |||||||||||||    
T  2555257 ctcaaagctaatatttcaacctgaatcaaataa 2555289  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 6281258 - 6281214
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| ||| |||||||    
T  6281258 ctcaaagctaatctttcaacctgaatcaaataaacatcgcactaa 6281214  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 44984672 - 44984713
Alignment:
Q  23 tacaaatacgactatatttaagtgttcaaaatactcatgttt 64  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  44984672 tacaaatatgactatattcaagtcttcaaaatactcatgttt 44984713  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 3312658 - 3312626
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataa 138  Q
    ||||||||||||||||||| |||||||||||||    
T  3312658 ctcaaagctaatatttcaacctgaatcaaataa 3312626  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 19861194 - 19861238
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    ||||||| ||||||||||| ||||||||| ||| |||||||||||    
T  19861194 ctcaaagttaatatttcaacctgaatcaagtaaacattgcactaa 19861238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 53155345 - 53155389
Alignment:
Q  106 ctcaaagctaatatttcaagctgaatcaaataagcattgcactaa 150  Q
    |||||||||||| |||||| ||||||||||||| || ||||||||    
T  53155345 ctcaaagctaatctttcaacctgaatcaaataaacactgcactaa 53155389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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