View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17654_high_2 (Length: 529)

Name: NF17654_high_2
Description: NF17654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17654_high_2
NF17654_high_2
[»] chr5 (33 HSPs)
chr5 (18-220)||(9853158-9853355)
chr5 (18-220)||(9820625-9820820)
chr5 (383-514)||(27904667-27904800)
chr5 (237-288)||(9853121-9853172)
chr5 (389-514)||(37897902-37898028)
chr5 (389-509)||(36798173-36798296)
chr5 (380-510)||(12406035-12406167)
chr5 (389-510)||(36798363-36798487)
chr5 (463-514)||(2974712-2974763)
chr5 (463-514)||(20512275-20512326)
chr5 (463-520)||(9852865-9852922)
chr5 (463-515)||(16132823-16132875)
chr5 (463-514)||(12406224-12406275)
chr5 (385-514)||(19131684-19131813)
chr5 (463-510)||(31080555-31080602)
chr5 (464-514)||(18403066-18403116)
chr5 (465-514)||(19340948-19340997)
chr5 (383-443)||(20629733-20629794)
chr5 (386-442)||(25364082-25364139)
chr5 (383-514)||(25910718-25910853)
chr5 (463-515)||(34320130-34320182)
chr5 (453-512)||(26702504-26702563)
chr5 (453-512)||(26972237-26972296)
chr5 (465-515)||(3999281-3999331)
chr5 (239-288)||(9820808-9820855)
chr5 (378-514)||(24405482-24405619)
chr5 (389-443)||(35166300-35166354)
chr5 (463-513)||(40276214-40276264)
chr5 (452-514)||(43098211-43098273)
chr5 (463-492)||(30604293-30604322)
chr5 (390-443)||(34319964-34320017)
chr5 (386-438)||(40133140-40133193)
chr5 (463-510)||(2974820-2974868)
[»] chr3 (27 HSPs)
chr3 (383-514)||(51315668-51315801)
chr3 (386-514)||(44585970-44586100)
chr3 (378-514)||(578597-578733)
chr3 (389-498)||(17773173-17773283)
chr3 (389-498)||(19074474-19074584)
chr3 (463-515)||(27178330-27178382)
chr3 (463-514)||(44436582-44436633)
chr3 (383-514)||(49787247-49787380)
chr3 (384-514)||(1938315-1938446)
chr3 (466-514)||(3916511-3916559)
chr3 (463-514)||(15976316-15976367)
chr3 (463-514)||(38957925-38957976)
chr3 (463-514)||(54464241-54464292)
chr3 (452-510)||(12759575-12759633)
chr3 (463-513)||(25843444-25843494)
chr3 (463-513)||(44433249-44433299)
chr3 (467-515)||(19404577-19404625)
chr3 (463-499)||(50802737-50802773)
chr3 (463-499)||(50873104-50873140)
chr3 (465-520)||(7218329-7218384)
chr3 (463-514)||(14340918-14340969)
chr3 (463-510)||(28944107-28944154)
chr3 (389-443)||(38177181-38177236)
chr3 (463-510)||(46226776-46226823)
chr3 (464-514)||(86653-86703)
chr3 (463-515)||(20432367-20432420)
chr3 (384-443)||(36687851-36687911)
[»] chr8 (24 HSPs)
chr8 (384-512)||(30539177-30539306)
chr8 (463-514)||(37813275-37813326)
chr8 (383-514)||(41487394-41487526)
chr8 (452-514)||(3676312-3676375)
chr8 (452-514)||(18092977-18093039)
chr8 (383-443)||(39889769-39889830)
chr8 (463-515)||(16982794-16982845)
chr8 (466-514)||(25144024-25144072)
chr8 (387-442)||(25896991-25897047)
chr8 (384-443)||(28349563-28349623)
chr8 (466-514)||(41602564-41602612)
chr8 (463-515)||(42218427-42218479)
chr8 (463-514)||(14880414-14880465)
chr8 (452-491)||(17071828-17071867)
chr8 (452-491)||(17576406-17576445)
chr8 (467-514)||(29044731-29044778)
chr8 (389-442)||(17070910-17070964)
chr8 (389-442)||(17577308-17577362)
chr8 (463-520)||(45457168-45457226)
chr8 (391-443)||(22192307-22192360)
chr8 (384-510)||(23702121-23702252)
chr8 (463-512)||(26823905-26823954)
chr8 (386-438)||(37939914-37939967)
chr8 (463-515)||(21486733-21486785)
[»] chr4 (28 HSPs)
chr4 (383-514)||(1420728-1420861)
chr4 (384-515)||(44356581-44356712)
chr4 (392-514)||(2016797-2016921)
chr4 (463-515)||(2654152-2654204)
chr4 (463-514)||(43074772-43074823)
chr4 (389-514)||(20112334-20112460)
chr4 (387-512)||(47999531-47999657)
chr4 (386-514)||(50769363-50769493)
chr4 (384-443)||(2180775-2180834)
chr4 (467-514)||(4796224-4796271)
chr4 (463-514)||(10059881-10059932)
chr4 (452-514)||(14449468-14449531)
chr4 (389-514)||(25909490-25909617)
chr4 (467-514)||(27978774-27978821)
chr4 (389-498)||(49185759-49185869)
chr4 (383-514)||(53312283-53312417)
chr4 (386-514)||(13825881-13826010)
chr4 (465-514)||(21322895-21322944)
chr4 (389-514)||(12719629-12719757)
chr4 (385-437)||(26089475-26089527)
chr4 (385-514)||(51362535-51362669)
chr4 (463-514)||(8965700-8965751)
chr4 (463-514)||(14060887-14060938)
chr4 (389-443)||(27978695-27978750)
chr4 (452-514)||(11824256-11824317)
chr4 (385-443)||(21451701-21451759)
chr4 (463-515)||(6207357-6207409)
chr4 (463-503)||(18937319-18937359)
[»] chr6 (15 HSPs)
chr6 (390-520)||(10727372-10727504)
chr6 (389-515)||(6036843-6036969)
chr6 (382-514)||(2853599-2853734)
chr6 (389-514)||(30349352-30349478)
chr6 (452-514)||(17532318-17532381)
chr6 (453-514)||(32143326-32143388)
chr6 (389-510)||(12766403-12766525)
chr6 (384-443)||(33399784-33399843)
chr6 (453-512)||(266298-266357)
chr6 (463-510)||(6036723-6036770)
chr6 (463-514)||(20474889-20474940)
chr6 (384-433)||(32143256-32143305)
chr6 (384-432)||(5003346-5003394)
chr6 (482-514)||(9381649-9381681)
chr6 (384-443)||(30349612-30349672)
[»] chr1 (16 HSPs)
chr1 (389-514)||(3377504-3377631)
chr1 (385-514)||(8301529-8301659)
chr1 (385-514)||(7579662-7579794)
chr1 (389-514)||(16874687-16874814)
chr1 (463-514)||(39642392-39642443)
chr1 (383-514)||(45738933-45739065)
chr1 (389-442)||(5287831-5287885)
chr1 (463-512)||(14978875-14978924)
chr1 (383-443)||(27864413-27864474)
chr1 (463-510)||(15659059-15659106)
chr1 (463-514)||(41997825-41997876)
chr1 (385-435)||(11050430-11050480)
chr1 (468-514)||(14190726-14190772)
chr1 (389-441)||(3377769-3377822)
chr1 (452-512)||(23220633-23220694)
chr1 (384-443)||(15659250-15659310)
[»] chr7 (25 HSPs)
chr7 (389-514)||(28350119-28350246)
chr7 (384-514)||(41243642-41243772)
chr7 (452-514)||(28350329-28350390)
chr7 (382-443)||(20505094-20505156)
chr7 (452-514)||(36903330-36903392)
chr7 (463-514)||(15029140-15029191)
chr7 (463-514)||(36580459-36580510)
chr7 (389-443)||(28472393-28472447)
chr7 (383-514)||(3318315-3318446)
chr7 (383-443)||(6792052-6792113)
chr7 (464-514)||(4049788-4049839)
chr7 (463-514)||(6726439-6726489)
chr7 (452-514)||(15107176-15107239)
chr7 (467-514)||(18186635-18186682)
chr7 (389-443)||(47909697-47909752)
chr7 (452-514)||(15348018-15348080)
chr7 (390-443)||(21505873-21505927)
chr7 (452-498)||(28472579-28472625)
chr7 (467-512)||(8073957-8074002)
chr7 (378-510)||(14247493-14247622)
chr7 (385-442)||(35250374-35250431)
chr7 (463-515)||(9500084-9500136)
chr7 (380-408)||(15106986-15107014)
chr7 (466-510)||(19644991-19645035)
chr7 (383-438)||(19645062-19645118)
[»] chr2 (29 HSPs)
chr2 (385-510)||(43028981-43029108)
chr2 (389-514)||(14489217-14489343)
chr2 (389-514)||(43028797-43028923)
chr2 (463-507)||(25464-25508)
chr2 (392-514)||(5470521-5470643)
chr2 (389-514)||(39918437-39918564)
chr2 (463-515)||(25333577-25333629)
chr2 (463-510)||(6592922-6592969)
chr2 (453-515)||(8857114-8857177)
chr2 (452-514)||(14943729-14943792)
chr2 (463-514)||(16043206-16043257)
chr2 (463-514)||(24472631-24472682)
chr2 (463-514)||(25411620-25411671)
chr2 (387-510)||(4576544-4576669)
chr2 (466-510)||(18969177-18969221)
chr2 (380-507)||(21361875-21362003)
chr2 (466-514)||(37431625-37431673)
chr2 (463-506)||(14489404-14489447)
chr2 (463-510)||(31827721-31827768)
chr2 (459-510)||(37803319-37803370)
chr2 (463-514)||(44617923-44617974)
chr2 (463-513)||(34760926-34760976)
chr2 (453-514)||(6592795-6592856)
chr2 (378-407)||(12948881-12948910)
chr2 (463-500)||(34100819-34100856)
chr2 (463-511)||(4925518-4925566)
chr2 (384-443)||(6592722-6592782)
chr2 (482-514)||(21024644-21024676)
chr2 (380-443)||(21358361-21358425)
[»] scaffold0137 (1 HSPs)
scaffold0137 (466-514)||(19995-20043)
[»] scaffold0011 (1 HSPs)
scaffold0011 (397-514)||(145364-145483)
[»] scaffold0515 (1 HSPs)
scaffold0515 (384-443)||(3637-3697)
[»] scaffold0306 (1 HSPs)
scaffold0306 (384-443)||(3637-3697)
[»] scaffold1458 (1 HSPs)
scaffold1458 (384-443)||(1469-1529)
[»] scaffold0025 (2 HSPs)
scaffold0025 (463-511)||(19216-19264)
scaffold0025 (389-440)||(19600-19652)
[»] scaffold0328 (1 HSPs)
scaffold0328 (463-514)||(9490-9541)
[»] scaffold0016 (1 HSPs)
scaffold0016 (463-514)||(203360-203411)
[»] scaffold0015 (1 HSPs)
scaffold0015 (463-514)||(76941-76991)
[»] scaffold0372 (1 HSPs)
scaffold0372 (385-443)||(366-424)
[»] scaffold0062 (1 HSPs)
scaffold0062 (466-514)||(46259-46307)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 8e-84; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 9853355 - 9853158
Alignment:
Q  18 gattctttatcaaccaagaaacaatacccatcgtttagcactctttttctctacgaaacgtaacttttttgtgtttgcagaaatatattttataaggaga 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9853355 gattctttatcaaccaagaaacaatacccatcgtttaacact--ttttctctacgaaacgtaacttttttgagtttgcagaaatatattttataaggaga 9853258  T
Q  118 agaagtatgattcaaaacttttgttcactgctctctctatatatagggctaaatagaaatcatatatttaactcatatcttttttaataaggaacaaatc 217  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||    
T  9853257 ag---tatgattcaaaacttttgttcactgctctctctatatatagggctaaacagaaatcatatttttaactcatatctattttaataaggaacaaatc 9853161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 9820625 - 9820820
Alignment:
Q  18 gattctttatcaaccaagaaacaatacccatcgtttagcactctttttctctacgaaacgtaacttttttgtgtttgcagaaatatattttataaggaga 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9820625 gattctttatcaaccaagaaacaatacccatcgtttaacact--ttttctctacgaaacgtaacttttttgagtttgcagaaatatattttataaggaga 9820722  T
Q  118 agaagtatgattcaaaacttttgttcactgctctctctatatatagggctaaatagaaatcatatatttaactcatatcttttttaataaggaacaaatc 217  Q
    |   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| ||  |||||||| ||||||||||    
T  9820723 a---gtatgattcaaaacttttgttctctgctctctctatatatagggctaaatagaaatcatatttttaaatcatgtc--ttttaatatggaacaaatc 9820817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 27904800 - 27904667
Alignment:
Q  383 ttaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacct 480  Q
    ||||| |||||||||||||||||||| |||||||  ||||||||| ||||||||||| ||||        |||||| |||||||| |||||||||||| |    
T  27904800 ttaggcttaatagcagttttagccctctaactttttcaaagttgcgattttggccccgtaagaaaaaaaactacaaaaccgccccctaagttttgcactt 27904701  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| |||||||  ||||||||||||    
T  27904700 gtggcagttttgtcccccaagaccaattttgact 27904667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 9853172 - 9853121
Alignment:
Q  237 aaggaacaaatcttcttgaaacaaaaaataacgaacaaatctttatgagatt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9853172 aaggaacaaatcttcttgaaacaaaaaataacgaacaaatctttatgagatt 9853121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 37898028 - 37897902
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaagttttgcacctgtggcag 487  Q
    |||||||||||||||||||  |||||||  ||||||||| ||||||||||||||||        |||||| |||||||||||||||||||  ||||||||    
T  37898028 ttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgcccctaagttttgcatatgtggcag 37897929  T
Q  488 ttttgacccccaaagccaattttgact 514  Q
    ||||| || ||||  ||||||||||||    
T  37897928 ttttggcctccaagaccaattttgact 37897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 509
Target Start/End: Original strand, 36798173 - 36798296
Alignment:
Q  389 ttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag-nnnnnnnnctacaatacc-gcccctaagttttgcacctgtggc 485  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||||||||         |||||| |||  ||||||||||||||| |||||||    
T  36798173 ttaatagcagttttagacccttaacttttccaaagttgcaattttggccccctaagaaaaaaaaactacaaaaccaccccctaagttttgcatctgtggc 36798272  T
Q  486 agttttgacccccaaagccaattt 509  Q
    ||||||| |||||||  |||||||    
T  36798273 agttttggcccccaagaccaattt 36798296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 510
Target Start/End: Original strand, 12406035 - 12406167
Alignment:
Q  380 atattaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgca 477  Q
    |||||||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||        |||||| |||| |||||||||||||||    
T  12406035 atattaggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaagaaaactacaaaaccgccccctaagttttgca 12406134  T
Q  478 cctgtggcagtttt-gacccccaaagccaatttt 510  Q
     ||||  ||||||| | ||||||| |||||||||    
T  12406135 actgt-acagttttggccccccaaggccaatttt 12406167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 510
Target Start/End: Complemental strand, 36798487 - 36798363
Alignment:
Q  389 ttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgtggca 486  Q
    |||||||||||||||| ||| |||||||| ||||||||| ||||||| ||||||||        || ||| |||| ||||||||||||||| |||| |||    
T  36798487 ttaatagcagttttagccccctaactttctcaaagttgcgattttggtcccctaagaaaaaaaactgcaaaaccgccccctaagttttgcaactgtagca 36798388  T
Q  487 gtttt-gacccccaaagccaatttt 510  Q
    ||||| | |||||||||||||||||    
T  36798387 gttttggccccccaaagccaatttt 36798363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 2974712 - 2974763
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  2974712 cccctaagttttgcatctgtggcagttttggcccccaatgccaattttgact 2974763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 20512275 - 20512326
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  20512275 cccctaagttttgcacctgtggtagttttgacccccaagaccaattttgact 20512326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 9852865 - 9852922
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgacttcatct 520  Q
    ||||||||||||||| |||||||||||||| | ||||| |||||||||||||| ||||    
T  9852865 cccctaagttttgcatctgtggcagttttggctcccaaggccaattttgacttgatct 9852922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 515
Target Start/End: Original strand, 16132823 - 16132875
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||||||||| |||||||||||  |||||| ||||||||||||||    
T  16132823 cccctaagttttgcacctatggcagttttggtccccaaggccaattttgactt 16132875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 12406275 - 12406224
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| || |||||||||||||| ||||||| |||||||||||||    
T  12406275 cccctaagttttacatctgtggcagttttggcccccaaggccaattttgact 12406224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 514
Target Start/End: Complemental strand, 19131813 - 19131684
Alignment:
Q  385 aggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgt 482  Q
    |||||||||||||||||||| ||| |||||||   |||||||| ||||| |||||||||         |||||| |||||||| ||||||||||| ||||    
T  19131813 aggtttaatagcagttttagtcctctaacttttctaaagttgcgatttttgccccctaa--aaaaaaactacaaaaccgccccctaagttttgcatctgt 19131716  T
Q  483 ggcagttttgacccccaaagccaattttgact 514  Q
    | |||||||| |||| || |||||||||||||    
T  19131715 gacagttttggccccgaaggccaattttgact 19131684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 31080555 - 31080602
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||    
T  31080555 cccctaagttttgcatctgtggcagttttggcccccaaggccaatttt 31080602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 18403066 - 18403116
Alignment:
Q  464 ccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||| || |||||||||||||||||||  ||||||||||||    
T  18403066 ccctaagttttgcatctctggcagttttgacccccaagaccaattttgact 18403116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 19340997 - 19340948
Alignment:
Q  465 cctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  19340997 cctaagttttgcatctgtggcagttttagtccccaaagccaattttgact 19340948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 20629733 - 20629794
Alignment:
Q  383 ttaggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||| |||||  |||||||||    
T  20629733 ttaggtttaatagcagttttcgccccttaactttcacaaagttgcgattttaaccccctaag 20629794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 25364139 - 25364082
Alignment:
Q  386 ggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaa 442  Q
    |||||||||||||||||  |||| |||||||| | |||||||||||||||||||||||    
T  25364139 ggtttaatagcagttttcaccctctaactttcacgaagttgcaattttggccccctaa 25364082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 25910718 - 25910853
Alignment:
Q  383 ttaggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnn---ctacaataccgccc-ctaagttttgcac 478  Q
    ||||| |||||| |||||||| ||| ||||||||  |||||||  ||||||||||||||||           |||||| ||| ||| |||| ||||||||    
T  25910718 ttaggcttaataacagttttaccccctaactttcttaaagttgtgattttggccccctaagaaaaacaaaaactacaaaaccaccctctaaattttgcac 25910817  T
Q  479 ctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||| ||||||| | |||||||||||    
T  25910818 ctgtggcagttttggcccccaaggtcaattttgact 25910853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 34320182 - 34320130
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||| ||  ||||||||||||| ||||||||| ||||||||||||    
T  34320182 cccctaagttttacatttgtggcagttttggcccccaaagtcaattttgactt 34320130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 512
Target Start/End: Original strand, 26702504 - 26702563
Alignment:
Q  453 tacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    ||||| |||||||| ||||||||||  ||||||||||||| |||||||  ||||||||||    
T  26702504 tacaaaaccgcccccaagttttgcatttgtggcagttttggcccccaagaccaattttga 26702563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 512
Target Start/End: Original strand, 26972237 - 26972296
Alignment:
Q  453 tacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    ||||| |||||||| ||||||||||  ||||||||||||| |||||||  ||||||||||    
T  26972237 tacaaaaccgcccccaagttttgcatttgtggcagttttggcccccaagaccaattttga 26972296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 3999331 - 3999281
Alignment:
Q  465 cctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||| ||  ||||||||||||| ||||||| ||||||||||||||    
T  3999331 cctaagttttacatatgtggcagttttggcccccaaggccaattttgactt 3999281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 9820808 - 9820855
Alignment:
Q  239 ggaacaaatcttcttgaaacaaaaaataacgaacaaatctttatgagatt 288  Q
    ||||||||||||||| ||||||||  ||||||||||||||||| ||||||    
T  9820808 ggaacaaatcttcttaaaacaaaa--taacgaacaaatctttaagagatt 9820855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 514
Target Start/End: Original strand, 24405482 - 24405619
Alignment:
Q  378 ttatattaggtttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcc-cctaagttttg 475  Q
    ||||| ||||||||||||||||||||| ||| |||||||  ||||||||| |||||| | |||| ||        |||||| ||||||  ||||||||||    
T  24405482 ttataataggtttaatagcagttttagtcccctaactttttcaaagttgcgattttgactccctgagaaaaaaaactacaaaaccgccaactaagttttg 24405581  T
Q  476 cacctgtggcagttttgacccccaaagccaattttgact 514  Q
    || || |||||||||||  |||||  |||||||||||||    
T  24405582 catctttggcagttttg-gccccatggccaattttgact 24405619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 35166300 - 35166354
Alignment:
Q  389 ttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||||||||| ||||||||  |||| |||| |||||| |||||||||    
T  35166300 ttaatagcagttttagcctttaacttttccaaaattgcgattttgaccccctaag 35166354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 40276264 - 40276214
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgac 513  Q
    |||||||||||||||  ||||||| ||||||||||||| || |||||||||    
T  40276264 cccctaagttttgcatatgtggcaattttgacccccaaggctaattttgac 40276214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 43098273 - 43098211
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||| |||||||||||||||||| ||||||||| ||||| |   |||||||||||    
T  43098273 ctacaaaaccgcgcctaagttttgcacctgtagcagttttggcccccgatatcaattttgact 43098211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 30604322 - 30604293
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttg 492  Q
    ||||||||||||||||||||||||||||||    
T  30604322 cccctaagttttgcacctgtggcagttttg 30604293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 34319964 - 34320017
Alignment:
Q  390 taatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||||||||||| |||| ||||||||   ||||||| ||||||||||||||||    
T  34319964 taatagcagttttcgcccctaactttcttgaagttgcgattttggccccctaag 34320017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 40133193 - 40133140
Alignment:
Q  386 ggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggcccc 438  Q
    |||||||||||| |||||||||  |||||||| ||||||||| |||||||||||    
T  40133193 ggtttaatagcaattttagccccctaactttcccaaagttgcgattttggcccc 40133140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 2974868 - 2974820
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgaccccc-aaagccaatttt 510  Q
    |||||||||||||||||||| ||||||||| ||||| || |||||||||    
T  2974868 cccctaagttttgcacctgtagcagttttggccccctaaggccaatttt 2974820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 51315801 - 51315668
Alignment:
Q  383 ttaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacct 480  Q
    ||||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||        |||||| |||||||| ||||||||||||||    
T  51315801 ttaggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcacct 51315702  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| ||||||| |||||||||||||    
T  51315701 gtggcagttttggcccccaaggccaattttgact 51315668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 386 - 514
Target Start/End: Complemental strand, 44586100 - 44585970
Alignment:
Q  386 ggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgtg 483  Q
    ||||||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||        |||||| |||| ||||||||||||||  |||||    
T  44586100 ggtttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcttctgtg 44586001  T
Q  484 gcagttttgacccccaaagccaattttgact 514  Q
    ||||||||| ||||||  |||||||||||||    
T  44586000 gcagttttggcccccacggccaattttgact 44585970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 378 - 514
Target Start/End: Complemental strand, 578733 - 578597
Alignment:
Q  378 ttatattaggtttaatagcagttttagcc-cttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaagttttgc 476  Q
    ||||| ||||||||||| ||||||||||| | |||||||  ||||||||| ||||||||||| ||||        |||||| |||||||||||||||| |    
T  578733 ttataataggtttaatatcagttttagcctcctaacttttccaaagttgcgattttggcccc-taagaaaaaaaactacaaaaccgcccctaagtttttc 578635  T
Q  477 acctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||| ||||||| ||||||| |||||||||||||    
T  578634 acctgtggtagttttggcccccaaggccaattttgact 578597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 498
Target Start/End: Original strand, 17773173 - 17773283
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaagttttgcacctgtggcag 487  Q
    |||||||||||||| ||||  |||||||| | ||||||| |||||||| |||||||        |||||| ||||||||||||||||||| |||||||||    
T  17773173 ttaatagcagttttcgccccctaactttcactaagttgcgattttggcaccctaaggaaaaaaactacaaaaccgcccctaagttttgcaactgtggcag 17773272  T
Q  488 ttttgaccccc 498  Q
    ||||| |||||    
T  17773273 ttttggccccc 17773283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 498
Target Start/End: Original strand, 19074474 - 19074584
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaagttttgcacctgtggcag 487  Q
    |||||||||||||| ||||  |||||||| | ||||||| |||||||| |||||||        |||||| ||||||||||||||||||| |||||||||    
T  19074474 ttaatagcagttttcgccccctaactttcactaagttgcgattttggcaccctaaggaaaaaaactacaaaaccgcccctaagttttgcaactgtggcag 19074573  T
Q  488 ttttgaccccc 498  Q
    ||||| |||||    
T  19074574 ttttggccccc 19074584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 27178382 - 27178330
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  27178382 cccctaagttttgcatctgtggtagttttgacccccaatgccaattttgactt 27178330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 44436633 - 44436582
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  44436633 cccctaagttttgcatctgtggcagttttggcccccaaggccaattttgact 44436582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 49787247 - 49787380
Alignment:
Q  383 ttaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacct 480  Q
    ||||| ||||||||| |||||||||| |||||||  |||||||||||| |||| ||||||||        ||| || |||  |||| |||||||||| ||    
T  49787247 ttaggcttaatagcaattttagccctctaacttttccaaagttgcaatcttggtcccctaagaaaaaaaactataaaaccatccctcaagttttgcatct 49787346  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| || |||||| |||||||||||    
T  49787347 gtggcagttttggcctccaaagtcaattttgact 49787380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 514
Target Start/End: Original strand, 1938315 - 1938446
Alignment:
Q  384 taggtttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacctg 481  Q
    ||||||||||||||||||||| |||||||||||   ||| |||| | ||||||||| || |        |||||| ||||||||| ||||||||||||||    
T  1938315 taggtttaatagcagttttagtcccttaacttttctaaaattgcgactttggcccc-taggaagaaaacctacaaaaccgccccttaagttttgcacctg 1938413  T
Q  482 tggcagttttgacccccaaagccaattttgact 514  Q
    ||| ||||||| ||| ||||| |||||||||||    
T  1938414 tggtagttttggcccacaaagtcaattttgact 1938446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 3916511 - 3916559
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  3916511 ctaagttttgcatctgtggcagttttggcccccaaagtcaattttgact 3916559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 15976316 - 15976367
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||| ||||||||||||| ||  |||||||||||||||||    
T  15976316 cccctaagttttgcacttgtggcagttttggccatcaaagccaattttgact 15976367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 38957925 - 38957976
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  38957925 cccctaagttttgcatttgtggcagttttggcccccaaggccaattttgact 38957976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 54464241 - 54464292
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||||||||||| | |||||||||||    
T  54464241 cccctaagttttgcatatgtggcagttttgacccccaaggtcaattttgact 54464292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 510
Target Start/End: Original strand, 12759575 - 12759633
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    |||||| ||||||||||||||||||| |||| ||||||||| || |||||| |||||||    
T  12759575 ctacaaaaccgcccctaagttttgcaactgtagcagttttggcctccaaagtcaatttt 12759633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 25843444 - 25843494
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgac 513  Q
    ||||||||||||||| ||||||||||||||  |||||| ||||||||||||    
T  25843444 cccctaagttttgcatctgtggcagttttggtccccaaggccaattttgac 25843494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 513
Target Start/End: Complemental strand, 44433299 - 44433249
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgac 513  Q
    |||||||||||||||  ||||||||||||| ||||||| ||||||||||||    
T  44433299 cccctaagttttgcatatgtggcagttttggcccccaaggccaattttgac 44433249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 19404625 - 19404577
Alignment:
Q  467 taagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||| |||| |||||||| ||||||| ||||||||||||||    
T  19404625 taagttttgcacatgtgacagttttggcccccaaggccaattttgactt 19404577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 499
Target Start/End: Original strand, 50802737 - 50802773
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgaccccca 499  Q
    |||||||||||||||| ||||||||||||||||||||    
T  50802737 cccctaagttttgcacatgtggcagttttgaccccca 50802773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 499
Target Start/End: Complemental strand, 50873140 - 50873104
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgaccccca 499  Q
    |||||||||||||||| ||||||||||||||||||||    
T  50873140 cccctaagttttgcacatgtggcagttttgaccccca 50873104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 520
Target Start/End: Complemental strand, 7218384 - 7218329
Alignment:
Q  465 cctaagttttgcacctgtggcagttttgacccccaaagccaattttgacttcatct 520  Q
    |||||||||| || |||||||||||||| ||||||| | |||||||||||| ||||    
T  7218384 cctaagttttacatctgtggcagttttggcccccaaggtcaattttgacttgatct 7218329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 14340969 - 14340918
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||| ||||||| || ||||||||||    
T  14340969 cccctaagttttgcatttgtggcagttttggcccccaacgctaattttgact 14340918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 28944107 - 28944154
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    |||||||||||||||| ||| ||||||||| ||||||| |||||||||    
T  28944107 cccctaagttttgcacatgtagcagttttggcccccaaggccaatttt 28944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 38177181 - 38177236
Alignment:
Q  389 ttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||| ||| ||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  38177181 ttaatggcaattttagccccttaactttcccaaagttgcgattttggccccctaag 38177236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 46226776 - 46226823
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    |||||| ||||||||||||||||||||||| ||||| | |||||||||    
T  46226776 cccctatgttttgcacctgtggcagttttggcccccgatgccaatttt 46226823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 86653 - 86703
Alignment:
Q  464 ccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| ||| ||||||||| |||||||  ||||||||||||    
T  86653 ccctaagttttgcacttgtagcagttttggcccccaagaccaattttgact 86703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 20432420 - 20432367
Alignment:
Q  463 cccctaagttttg-cacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    ||||||||||||  || |||||||||||||||||||||| | ||||||||||||    
T  20432420 cccctaagtttttacatctgtggcagttttgacccccaaggacaattttgactt 20432367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 36687911 - 36687851
Alignment:
Q  384 taggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||||||||||||||| |||| |||  ||||||||| ||||| | ||||||||    
T  36687911 taggtttaatagcagttttagcccattaatttttccaaagttgcgattttagtcccctaag 36687851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 384 - 512
Target Start/End: Complemental strand, 30539306 - 30539177
Alignment:
Q  384 taggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgt 482  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||        |||||| |||| ||||||||||||||| ||||    
T  30539306 taggcttaatagcagttttagcccttaactttcccaaagttgcgattttggtcccctaagaaaaaaaactacaaaaccgtcccctaagttttgcatctgt 30539207  T
Q  483 ggcagttttgacccccaaagccaattttga 512  Q
    |||||||||| ||||||| | |||||||||    
T  30539206 ggcagttttggcccccaatgtcaattttga 30539177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 37813326 - 37813275
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  37813326 cccctaagttttgcatctgtggcagttttggcccccaaggccaattttgact 37813275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 41487526 - 41487394
Alignment:
Q  383 ttaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacct 480  Q
    |||||||||||||||||||||||||| |||||||  ||||||||| ||||| | ||| ||||        |||||| |||| ||||||||||||||| ||    
T  41487526 ttaggtttaatagcagttttagccctctaacttttccaaagttgcgattttag-cccttaagaaaaaaaactacaaaaccgccccctaagttttgcaact 41487428  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
    || || |||||| |||||||  ||||||||||||    
T  41487427 gtagctgttttggcccccaagaccaattttgact 41487394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 3676375 - 3676312
Alignment:
Q  452 ctacaataccgccc-ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||| |||||||||||| ||||||||||||||  ||||||| ||||||||||||    
T  3676375 ctacaaaaccgcccactaagttttgcatctgtggcagttttggtccccaaaaccaattttgact 3676312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 18092977 - 18093039
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||| |||||||||||  ||||||||||||||| ||||| ||| |||||||||||    
T  18092977 ctacaaaaccgcacctaagttttgaccctgtggcagttttggccccctaagtcaattttgact 18093039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 39889769 - 39889830
Alignment:
Q  383 ttaggtttaatagcagttttagcc-cttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||| |||||||||||||| ||| |||||||||| | ||||||||||||||||||| ||||    
T  39889769 ttaggcttaatagcagttttcgcctcttaactttcacgaagttgcaattttggccccttaag 39889830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 16982845 - 16982794
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    ||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||    
T  16982845 cccctaagttttgcatctgtgccagttttg-cccccaaggccaattttgactt 16982794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 25144024 - 25144072
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  25144024 ctaagttttgcatctgtggcagttttggcatccaaagccaattttgact 25144072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 442
Target Start/End: Original strand, 25896991 - 25897047
Alignment:
Q  387 gtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaa 442  Q
    |||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||    
T  25896991 gtttaatagcagttttagccccctaactttttcaaagttgcgattttggccccctaa 25897047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 28349623 - 28349563
Alignment:
Q  384 taggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| ||||||| |||||||||||  |||||||| ||||||||| ||||||||||||||||    
T  28349623 taggcttaatagtagttttagccccctaactttcccaaagttgcgattttggccccctaag 28349563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 41602564 - 41602612
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||| | ||||||||||||| ||||| |||||||||||||||    
T  41602564 ctaagttttgcccatgtggcagttttggccccctaagccaattttgact 41602612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 42218479 - 42218427
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||||| || |||||||||||||||||| | | ||||||||||||    
T  42218479 cccctaagttttgccccagtggcagttttgaccccctaggtcaattttgactt 42218427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 14880414 - 14880465
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||| ||||||| |||||||||||||| ||||||| ||| |||||||||    
T  14880414 cccctaaattttgcatctgtggcagttttggcccccaaggccgattttgact 14880465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 17071867 - 17071828
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagtttt 491  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  17071867 ctacaaaaccgcccctaagttttgcacctgtgacagtttt 17071828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 17576406 - 17576445
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagtttt 491  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  17576406 ctacaaaaccgcccctaagttttgcacctgtgacagtttt 17576445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 29044778 - 29044731
Alignment:
Q  467 taagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  29044778 taagttttgcatttgtggcagttttggcccccaaggccaattttgact 29044731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 17070910 - 17070964
Alignment:
Q  389 ttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaa 442  Q
    |||||||||||||| |||| ||||||||| | ||||||| |||||||||||||||    
T  17070910 ttaatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaa 17070964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 17577362 - 17577308
Alignment:
Q  389 ttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaa 442  Q
    |||||||||||||| |||| ||||||||| | ||||||| |||||||||||||||    
T  17577362 ttaatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaa 17577308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 520
Target Start/End: Complemental strand, 45457226 - 45457168
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaag-ccaattttgacttcatct 520  Q
    ||||||| ||||||| |||||||||||||||| ||||| | ||||||||||||| ||||    
T  45457226 cccctaaattttgcatctgtggcagttttgactcccaaggcccaattttgacttgatct 45457168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 22192307 - 22192360
Alignment:
Q  391 aatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||| |||| ||||||||| | ||||||| ||||||||||||||||    
T  22192307 aatagcagttttcgccccttaactttcacgaagttgcgattttggccccctaag 22192360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 510
Target Start/End: Original strand, 23702121 - 23702252
Alignment:
Q  384 taggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccct---aagnnnnnnnnctacaataccgcccctaagttttgcacc 479  Q
    |||| |||||||||||||| |||| ||||||||| ||||||| | ||||||| |||||   |||        |||||| ||||||||||||||||||| |    
T  23702121 taggcttaatagcagttttcgccccttaactttcacaaagttacgattttggtcccctaagaagaaaaaaaactacaaaaccgcccctaagttttgcaac 23702220  T
Q  480 tgtggcagtttt-gacccccaaagccaatttt 510  Q
    ||| | |||||| | ||||||| |||||||||    
T  23702221 tgtagtagttttggtcccccaaggccaatttt 23702252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 26823905 - 26823954
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    |||||||||||||||  |||||||||||||  |||||| |||||||||||    
T  26823905 cccctaagttttgcatttgtggcagttttgggccccaatgccaattttga 26823954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 37939914 - 37939967
Alignment:
Q  386 ggtttaatagcagttttagcc-cttaactttcgcaaagttgcaattttggcccc 438  Q
    ||||||||||||||||||||| ||||| |||  ||||||||| |||||||||||    
T  37939914 ggtttaatagcagttttagcctcttaattttttcaaagttgcgattttggcccc 37939967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 515
Target Start/End: Original strand, 21486733 - 21486785
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||||||||||||||| ||||| || ||||   ||||||||||||    
T  21486733 cccctaagttttgcacctgtggcatttttggcctccaagatcaattttgactt 21486785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 1420861 - 1420728
Alignment:
Q  383 ttaggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacct 480  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||        |||||| |||||||| |||||||||||  |    
T  1420861 ttaggcttaatagcagttttagccccttaactttcccaaagttacgattttggtcccctaagaaaaagaactacaaaaccgccccataagttttgcattt 1420762  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||| |||||||||| |||||||||||||    
T  1420761 gtggcagttatgacccccaaggccaattttgact 1420728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 384 - 515
Target Start/End: Complemental strand, 44356712 - 44356581
Alignment:
Q  384 taggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgt 482  Q
    |||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||         ||||| |||| |||||||||||||||  |||    
T  44356712 taggcttaatagcagttttagcccctaactttctcaaagttgcgattttggccgcctaagaaaaaaat-tacaaaaccgccccctaagttttgcatatgt 44356614  T
Q  483 ggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||| |||||||  |||||||||||||    
T  44356613 ggcagttttggcccccaagaccaattttgactt 44356581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 514
Target Start/End: Original strand, 2016797 - 2016921
Alignment:
Q  392 atagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggcagtt 489  Q
    ||||||||||||||||  |||||||  ||||||||| |||||||||| | |||        |||||| || ||||| |||||||||||| ||||||||||    
T  2016797 atagcagttttagccccctaacttttccaaagttgcgattttggccctcaaagaaaaaagactacaaaactgccccctaagttttgcacatgtggcagtt 2016896  T
Q  490 ttgacccccaaagccaattttgact 514  Q
    ||| ||||||| |||||||||||||    
T  2016897 ttggcccccaaggccaattttgact 2016921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 2654204 - 2654152
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  2654204 cccctaagttttgcatatgtggcagttttgacccccaaggccaattttgactt 2654152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 43074823 - 43074772
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  43074823 cccctaagttttgcatctgtggcagttttggcccccaaggccaattttgact 43074772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 20112460 - 20112334
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaa-gttttgcacctgtggca 486  Q
    |||||| ||||||||||| | |||||||  ||||||||| |||||||||||| |||        |||||| |||||||| || ||||||||  |||||||    
T  20112460 ttaataacagttttagccttctaacttttccaaagttgcgattttggcccccaaagaaaaata-ctacaaaaccgcccccaaagttttgcatatgtggca 20112362  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    |||||| |||||||||||||||||||||    
T  20112361 gttttggcccccaaagccaattttgact 20112334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 512
Target Start/End: Original strand, 47999531 - 47999657
Alignment:
Q  387 gtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggc 485  Q
    ||||||||||||||||| | | ||| |||  ||||||||| ||||| ||||||||||        |||||| ||||| || |||||||| || |||||||    
T  47999531 gtttaatagcagttttaactcctaattttttcaaagttgcgatttttgccccctaagaaaaaaaactacaaaaccgctccataagttttacatctgtggc 47999630  T
Q  486 agttttgacccccaaagccaattttga 512  Q
    |||||||||||| || |||||||||||    
T  47999631 agttttgacccctaaggccaattttga 47999657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 386 - 514
Target Start/End: Original strand, 50769363 - 50769493
Alignment:
Q  386 ggtttaatagcagtttta-gcccttaactttcgcaaagttgcaattttggccccctaag-nnnnnnnnctacaataccgcccctaagttttgcacctgtg 483  Q
    ||||||||||||||||||  ||| |||||||| ||||||||| |||||| |||||||||         |||||| ||||||||||||||||||| || ||    
T  50769363 ggtttaatagcagttttatccccctaactttcccaaagttgcgattttgcccccctaagaaaaaaaaactacaaaaccgcccctaagttttgcatctatg 50769462  T
Q  484 gcagttttgacccccaaagccaattttgact 514  Q
    ||||||||  |||| || | |||||||||||    
T  50769463 gcagttttagcccctaaggtcaattttgact 50769493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 2180775 - 2180834
Alignment:
Q  384 taggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||||||||||| |||||||||||  ||||||||| ||||| || |||||||    
T  2180775 taggtttaatagcagttttaacccttaactttttcaaagttgcgattttagctccctaag 2180834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 4796271 - 4796224
Alignment:
Q  467 taagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||||||||||||| ||||||||  |||||||||||    
T  4796271 taagttttgcacctgtggcagttttggcccccaaaatcaattttgact 4796224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 10059932 - 10059881
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| ||| ||| |||||||||||||    
T  10059932 cccctaagttttgcatctgtggcagttttggccctcaaggccaattttgact 10059881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 14449531 - 14449468
Alignment:
Q  452 ctacaataccgc-ccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||| ||||||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  14449531 ctacaaaaccgctccctaagttttgcatttgtggcagttttggcccccaaggccaattttgact 14449468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 25909490 - 25909617
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggca 486  Q
    ||||||||||||||| |||  |||||||  ||||||||  ||||||||||||||||        ||| || |||||||| |||||||||||| |||||      
T  25909490 ttaatagcagttttaaccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactataaaaccgccccctaagttttgcacttgtggag 25909589  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||| |||||||||||||    
T  25909590 gttttggcccccaaggccaattttgact 25909617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 514
Target Start/End: Original strand, 27978774 - 27978821
Alignment:
Q  467 taagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||||    
T  27978774 taagttttgcatttgtggcagttttgacccccaaggccaattttgact 27978821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 498
Target Start/End: Complemental strand, 49185869 - 49185759
Alignment:
Q  389 ttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggcag 487  Q
    ||||||||||||||  |||  ||||||| ||||||||| ||||||||||||||||        |||||| |||||||| ||||||||||| |||| | ||    
T  49185869 ttaatagcagttttcacccccaactttcacaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccttaagttttgcaactgttgtag 49185770  T
Q  488 ttttgaccccc 498  Q
    ||||| |||||    
T  49185769 ttttggccccc 49185759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 53312283 - 53312417
Alignment:
Q  383 ttaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnn-ctacaataccgcccc-taagttttgcacc 479  Q
    ||||| ||||||||| |||||||||  |||||||  ||||||||| ||||||||||||||||         |||||| ||| |||| ||| ||||||||     
T  53312283 ttaggcttaatagcatttttagccccctaactttttcaaagttgcgattttggccccctaagaaaaacaaactacaaaaccaccccctaaattttgcaca 53312382  T
Q  480 tgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||| ||||||| |||||||| ||||    
T  53312383 tgtggcagttttggcccccaaggccaatttggact 53312417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 514
Target Start/End: Original strand, 13825881 - 13826010
Alignment:
Q  386 ggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnn-ctacaataccgcccctaagttttgcacctgtgg 484  Q
    |||||||||||||||||||||| ||| |||    ||||||| ||||||| ||||||||         ||| || ||||||| |||||||||| |||||||    
T  13825881 ggtttaatagcagttttagcccctaagttttaagaagttgcgattttgggcccctaagaaaaaaaaactaaaaaaccgcccttaagttttgcccctgtgg 13825980  T
Q  485 cagttttgacccccaaagccaattttgact 514  Q
    |||||||| ||||  | |||||||||||||    
T  13825981 cagttttggccccttaggccaattttgact 13826010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 21322944 - 21322895
Alignment:
Q  465 cctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||  |||| |||||||||||||||| |||||||||||||    
T  21322944 cctaagttttgcatatgtgacagttttgacccccaatgccaattttgact 21322895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 12719757 - 12719629
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnn-ctacaataccgcccc-taagttttgcacctgtggc 485  Q
    ||||||||||||||| |||  |||||||| ||||||||  ||||||||||||||||         |||||| ||| |||| ||||||||||| |||||||    
T  12719757 ttaatagcagttttaaccccctaactttcccaaagttgatattttggccccctaagaaaaaaaaactacaaaaccaccccctaagttttgcatctgtggc 12719658  T
Q  486 agttttgacccccaaagccaattttgact 514  Q
    ||||||| || ||||  ||||||||||||    
T  12719657 agttttggcctccaagaccaattttgact 12719629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 437
Target Start/End: Original strand, 26089475 - 26089527
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccc 437  Q
    |||||||||||||||||||| || |||||||   |||||||||||||||||||    
T  26089475 aggtttaatagcagttttagtccctaacttttataaagttgcaattttggccc 26089527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 514
Target Start/End: Original strand, 51362535 - 51362669
Alignment:
Q  385 aggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnn---ctacaataccgcccc-taagttttgcacc 479  Q
    ||||||||||| |||||||||||  |||||||   |||||||| ||||||||||||||||           |||||| |||||||| |||||||||||      
T  51362535 aggtttaatagtagttttagccccctaacttttctaaagttgcgattttggccccctaagaagaaaaaaaactacaaaaccgccccctaagttttgcata 51362634  T
Q  480 tgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||| |||||||  ||||||||||||    
T  51362635 tgtggcagttttggcccccaagaccaattttgact 51362669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 8965751 - 8965700
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| ||||||||||||||  |||||| | |||||||||||    
T  8965751 cccctaagttttgcatctgtggcagttttggtccccaatgtcaattttgact 8965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 14060938 - 14060887
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| || |||||||||||||| ||||||| || ||||||||||    
T  14060938 cccctaagttttacatctgtggcagttttggcccccaaggctaattttgact 14060887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 27978695 - 27978750
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||| |||||||||    
T  27978695 ttaatagcagtttaagccctctaactttctcaaagttgcgattttgaccccctaag 27978750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 11824256 - 11824317
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| |||||||||||||||||||  |||||||||||||   ||||| |||||||||||||    
T  11824256 ctacaaaaccgcccctaagttttgcatgtgtggcagttttg-gtcccaaggccaattttgact 11824317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 21451759 - 21451701
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||| |||||||||||| ||  |||||||| |||||||||  |||||||||||||||    
T  21451759 aggtttgatagcagttttaacctctaactttcccaaagttgcgcttttggccccctaag 21451701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 6207409 - 6207357
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||||||  ||||||| ||||| ||||||| | ||||||||||||    
T  6207409 cccctaagttttgcatttgtggcaattttggcccccaaggtcaattttgactt 6207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 503
Target Start/End: Original strand, 18937319 - 18937359
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagc 503  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  18937319 cccctaagttttgcaactgtagcagttttggcccccaaagc 18937359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 390 - 520
Target Start/End: Complemental strand, 10727504 - 10727372
Alignment:
Q  390 taatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggcag 487  Q
    ||||||||||||||||||  |||||||  ||||||||  ||||||||||||||||        |||||| |||||||| ||||||||||| |||||||||    
T  10727504 taatagcagttttagccccctaacttttccaaagttgtgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatctgtggcag 10727405  T
Q  488 ttttgacccccaaagccaattttgacttcatct 520  Q
    ||||| ||||||| |||||||||||||| ||||    
T  10727404 ttttggcccccaaggccaattttgacttgatct 10727372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 389 - 515
Target Start/End: Complemental strand, 6036969 - 6036843
Alignment:
Q  389 ttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgtggcag 487  Q
    ||||||||||||||||||| |||||||   |||||||| ||||||||| ||||||        |||||| || | |||||||||||||||  ||||||||    
T  6036969 ttaatagcagttttagcccctaacttttctaaagttgcgattttggcctcctaagaagaaaa-ctacaaaactgtcccctaagttttgcatatgtggcag 6036871  T
Q  488 ttttgacccccaaagccaattttgactt 515  Q
    ||||||||||||||||||||||||||||    
T  6036870 ttttgacccccaaagccaattttgactt 6036843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 514
Target Start/End: Complemental strand, 2853734 - 2853599
Alignment:
Q  382 attaggtttaatagcagttttagcc-cttaactttcgcaaagttgcaattttggc-cccctaagnnnnnnnnctacaataccg-cccctaagttttgcac 478  Q
    |||||| ||||||||||||||| || | |||||||| |||||||||||||||||| ||||||||        |||||| |||| |||||||||||| ||     
T  2853734 attaggcttaatagcagttttaacctcctaactttctcaaagttgcaattttggcccccctaagaaaaaaaactacaaaaccgccccctaagtttttcat 2853635  T
Q  479 ctgtggcagttttgacccccaaagccaattttgact 514  Q
     ||||||||||||| ||||||| |||||||||||||    
T  2853634 atgtggcagttttggcccccaaggccaattttgact 2853599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 30349352 - 30349478
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacctgtggca 486  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||||  ||||||||        |||||| ||||||||| |||||||||| |||||| |    
T  30349352 ttaatagcagttttagccctctaactttcccaaagttgcgattttgagcccctaagaaaaaaa-ctacaaaaccgccccttaagttttgcatctgtggta 30349450  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    |||||||||||||| ||||||| |||||    
T  30349451 gttttgacccccaaggccaattatgact 30349478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 17532318 - 17532381
Alignment:
Q  452 ctacaataccgcccct-aagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  17532318 ctacaaaaccgccccttaagttttgcacctgtggcagttttggcccctaaagccagttttgact 17532381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 32143326 - 32143388
Alignment:
Q  453 tacaataccgcccct-aagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||    
T  32143326 tacaaaaccgccccttaagttttgcacctgtggcagttttggcccccaagaccaattttgact 32143388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 510
Target Start/End: Complemental strand, 12766525 - 12766403
Alignment:
Q  389 ttaatagcagtttt-agcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacctgtggca 486  Q
    |||||||||||||| | ||| |||||||| | ||||||| |||||||||||||||         |||||| ||||||||| |||||||||| |||| |||    
T  12766525 ttaatagcagttttcaccccctaactttcacgaagttgcgattttggccccctaa-aaaaaaaactacaaaaccgccccttaagttttgcaactgtagca 12766427  T
Q  487 gttttgacccccaaagccaatttt 510  Q
    |||||| ||||||| |||||||||    
T  12766426 gttttggcccccaaggccaatttt 12766403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 33399784 - 33399843
Alignment:
Q  384 taggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| ||||||||||||||||||| |||||||  ||||||||| |||||||||| |||||    
T  33399784 taggcttaatagcagttttagcccctaacttttccaaagttgcgattttggccctctaag 33399843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 512
Target Start/End: Complemental strand, 266357 - 266298
Alignment:
Q  453 tacaataccgcccct-aagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    ||||| ||||||||| |||||||||||||||||||||||||  ||||||| ||||||||||    
T  266357 tacaaaaccgccccttaagttttgcacctgtggcagttttg-gccccaaaaccaattttga 266298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 6036723 - 6036770
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    |||||||||||||||  ||||||||||||| ||||||| |||||||||    
T  6036723 cccctaagttttgcatatgtggcagttttggcccccaaggccaatttt 6036770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 20474940 - 20474889
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| ||||||| | |||| ||||||    
T  20474940 cccctaagttttgcatctgtggcagttttggcccccaatgtcaatgttgact 20474889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 32143256 - 32143305
Alignment:
Q  384 taggtttaatagcagttttagcccttaactttcgcaaagttgcaattttg 433  Q
    ||||||||||||||| |||||||| |||||||  ||||||||| ||||||    
T  32143256 taggtttaatagcagatttagcccctaactttttcaaagttgcgattttg 32143305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 5003394 - 5003346
Alignment:
Q  384 taggtttaatagcagttttagcccttaactttcgcaaagttgcaatttt 432  Q
    |||| |||||||| |||||| |||||||||||| ||||||||| |||||    
T  5003394 taggattaatagcggttttaccccttaactttcccaaagttgcgatttt 5003346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 514
Target Start/End: Complemental strand, 9381681 - 9381649
Alignment:
Q  482 tggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||||||| |||||||||||||    
T  9381681 tggcagttttgacccccaaggccaattttgact 9381649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 30349672 - 30349612
Alignment:
Q  384 taggtttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| |||||||||||||| | ||| |||||||  ||||||||| ||||||||||||||||    
T  30349672 taggcttaatagcagtttttgtcccctaactttttcaaagttgcgattttggccccctaag 30349612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 3377504 - 3377631
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggca 486  Q
    |||||||||||||||||||  |||||||  ||||||||| ||||||||||||||||        |||||| |||||||| |||||||||||  |||||||    
T  3377504 ttaatagcagttttagccccctaacttttccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcatttgtggca 3377603  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||| |||||||||||||    
T  3377604 gttttggcccccaaggccaattttgact 3377631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 385 - 514
Target Start/End: Complemental strand, 8301659 - 8301529
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgtg 483  Q
    ||||||||||||||||||||||| ||| |||  ||||||| |||||||| ||| |||||        |||||| |||| ||||||| ||||||| |||||    
T  8301659 aggtttaatagcagttttagcccctaatttttccaaagtttcaattttgaccctctaagaataaaaactacaaaaccgtcccctaaattttgcatctgtg 8301560  T
Q  484 gcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||||  ||||||||||||    
T  8301559 gcagttttgacccccaagaccaattttgact 8301529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 514
Target Start/End: Original strand, 7579662 - 7579794
Alignment:
Q  385 aggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttgg-ccccctaagnnnnnnnnctacaataccgccc-ctaagttttgcacctg 481  Q
    ||||||||||||||||||| ||| |||||||||  |||||||| ||||||| |||||||||        |||||| ||||||| ||||||||||||| ||    
T  7579662 aggtttaatagcagttttaaccccttaactttccaaaagttgcgattttggcccccctaagaaaaaaaactacaaaaccgcccgctaagttttgcacttg 7579761  T
Q  482 tggcagttttgacccccaaagccaattttgact 514  Q
    ||||| ||||  |||||||||| ||||||||||    
T  7579762 tggcaatttttgcccccaaagctaattttgact 7579794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 16874814 - 16874687
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggcccc-ctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggc 485  Q
    ||||||||||||||| |||  |||||||| ||||||||||||||||| ||| |||||        |||||| |||||||| ||||||||||| |||||||    
T  16874814 ttaatagcagttttaaccccctaactttctcaaagttgcaattttggaccctctaagaaaaaaa-ctacaaaaccgccccataagttttgcatctgtggc 16874716  T
Q  486 agttttgacccccaaagccaattttgact 514  Q
    ||||||| | ||||| |||||||||||||    
T  16874715 agttttggctcccaaggccaattttgact 16874687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 39642443 - 39642392
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  39642443 cccctaagttttgcatttgtggcagttttggcccccaaagccaattttgact 39642392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 45738933 - 45739065
Alignment:
Q  383 ttaggtttaatagcagttttagc-ccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacct 480  Q
    ||||| ||||||||| ||||| | || |||||||| ||||||||  |||||| |||||||||        |||||| ||||||||| |||||||||| ||    
T  45738933 ttaggcttaatagcaattttaactccctaactttctcaaagttgtgattttgaccccctaaggaaaaaa-ctacaaaaccgccccttaagttttgcatct 45739031  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
     ||||||||||| ||||||||| |||||||||||    
T  45739032 atggcagttttggcccccaaagtcaattttgact 45739065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Complemental strand, 5287885 - 5287831
Alignment:
Q  389 ttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaa 442  Q
    ||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||    
T  5287885 ttaatagcagttttaaccccttaactttctcaaagttgcgattttggccccctaa 5287831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 14978875 - 14978924
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    |||||||||||||||||||||| ||||||| |||| || |||||||||||    
T  14978875 cccctaagttttgcacctgtggtagttttggccccaaaggccaattttga 14978924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 27864474 - 27864413
Alignment:
Q  383 ttaggtttaatagcagttttagc-ccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||| |||| |||||||||||| || |||||||  ||||||||||||||||||||||||||    
T  27864474 ttaggcttaacagcagttttagctccctaacttttccaaagttgcaattttggccccctaag 27864413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Original strand, 15659059 - 15659106
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    ||||||||||||||| |||  ||||||||| |||||||||||||||||    
T  15659059 cccctaagttttgcaactggagcagttttggcccccaaagccaatttt 15659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 41997876 - 41997825
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||| |||||| |||||||||||||| || |||| |||||||||||||    
T  41997876 cccctaagctttgcatctgtggcagttttggcctccaaggccaattttgact 41997825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 435
Target Start/End: Complemental strand, 11050480 - 11050430
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggc 435  Q
    |||||||||||||||||| | || |||||||| | ||||||||||||||||    
T  11050480 aggtttaatagcagttttcgtccctaactttcacgaagttgcaattttggc 11050430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 14190772 - 14190726
Alignment:
Q  468 aagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||| |||||||||||||| || |||| |||||||||||||    
T  14190772 aagttttgcatctgtggcagttttggcctccaatgccaattttgact 14190726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 3377822 - 3377769
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggcccccta 441  Q
    |||||||||||||||||||  |||||||| ||||||||  ||||||||||||||    
T  3377822 ttaatagcagttttagccccctaactttcccaaagttgtgattttggcccccta 3377769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 23220633 - 23220694
Alignment:
Q  452 ctacaataccgcccct-aagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    |||||| ||||||||| ||||||||||| |||||| |||||| |||||||  ||||||||||    
T  23220633 ctacaaaaccgccccttaagttttgcacatgtggcggttttggcccccaagaccaattttga 23220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 15659310 - 15659250
Alignment:
Q  384 taggtttaatagcagtttt-agcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||||||||||||||||| ||||| |||||||  ||||||||  ||||||| ||||||||    
T  15659310 taggtttaatagcagttttaagcccctaacttttccaaagttgtgattttggtcccctaag 15659250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 28350119 - 28350246
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggca 486  Q
    |||||||||||||||||||  |||||||| | ||||| | ||||||||||||||||        |||||| |||||||| |||||||||| |||||||||    
T  28350119 ttaatagcagttttagccccctaactttcacgaagttacgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttgcccctgtggca 28350218  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    |||||| |||||||  ||||||||||||    
T  28350219 gttttggcccccaagaccaattttgact 28350246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 514
Target Start/End: Original strand, 41243642 - 41243772
Alignment:
Q  384 taggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaagttttgcacctgt 482  Q
    |||| |||||||||||||||||||  |||||||  ||||||||||||||| ||||||||||        |||||| |||||||||||||||||||  |||    
T  41243642 taggcttaatagcagttttagccccctaacttttccaaagttgcaattttagccccctaagaaaaaaa-ctacaaaaccgcccctaagttttgcatttgt 41243740  T
Q  483 ggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||   |||||| |||||||||||||    
T  41243741 ggcagtttttgtccccaaggccaattttgact 41243772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 28350390 - 28350329
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||    
T  28350390 ctacaaaaccgcccctaagttttgcacctgtggcagttttg-gccccaaggccaattttgact 28350329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 20505094 - 20505156
Alignment:
Q  382 attaggtttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||| | ||||||||||||||    
T  20505094 attaggtttaatagcagttttagccccctaactttctcaaagttgcgactttggccccctaag 20505156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 36903330 - 36903392
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| |||||||||||||||| || |||||||||||||| ||| ||| |||||||||||||    
T  36903330 ctacaaaaccgcccctaagttttccatctgtggcagttttggccctcaaggccaattttgact 36903392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 15029140 - 15029191
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||| ||||||||||||| ||||||| | |||||||||||    
T  15029140 cccctaagttttgcacatgtggcagttttggcccccaaggtcaattttgact 15029191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 36580510 - 36580459
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||| ||||||||| |||||||||||    
T  36580510 cccctaagttttgcatttgtggcagttttggcccccaaagtcaattttgact 36580459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 28472393 - 28472447
Alignment:
Q  389 ttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||||||||||||||||| |||||||  ||||||||| |||||| |||||||||    
T  28472393 ttaatagcagttttagcccctaacttttccaaagttgcgattttgaccccctaag 28472447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 3318315 - 3318446
Alignment:
Q  383 ttaggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacct 480  Q
    ||||| ||||||| ||||||||||| ||||||||  ||||||||| ||||||| |||||||          ||||| |||| |||| |||||||||||||    
T  3318315 ttaggcttaataggagttttagccccttaacttttccaaagttgcgattttggtcccctaaaaaaaaat--tacaaaaccgtcccttaagttttgcacct 3318412  T
Q  481 gtggcagttttgacccccaaagccaattttgact 514  Q
    ||| || |||||||| ||||| ||||||||||||    
T  3318413 gtgacatttttgacctccaaaaccaattttgact 3318446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 383 - 443
Target Start/End: Complemental strand, 6792113 - 6792052
Alignment:
Q  383 ttaggtttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||||||||||||| ||| |||||||  ||||||||| ||||||| ||||||||    
T  6792113 ttaggtttaatagcagttttagccccctaacttttccaaagttgcgattttggtcccctaag 6792052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 4049788 - 4049839
Alignment:
Q  464 ccctaagt-tttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||| |||||| |||||||||||||||||| ||| |||||||||||||    
T  4049788 ccctaagtctttgcatctgtggcagttttgaccctcaaggccaattttgact 4049839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 6726489 - 6726439
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||| ||||||||||||| ||||||| | |||||||||||    
T  6726489 cccctaagttttgcacatgtggcagttttg-cccccaaggacaattttgact 6726439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 15107239 - 15107176
Alignment:
Q  452 ctacaataccgc-ccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||| ||||||||||||||  ||||||||||||| || |||| |||||||||||||    
T  15107239 ctacaaaaccgctccctaagttttgcatttgtggcagttttggcctccaatgccaattttgact 15107176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 18186682 - 18186635
Alignment:
Q  467 taagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||| ||||||||||||||  |||||| |||||||||||||    
T  18186682 taagttttgcatctgtggcagttttggtccccaaggccaattttgact 18186635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 47909697 - 47909752
Alignment:
Q  389 ttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||||||||||||| ||| |||||||| ||||||||| ||||| ||||||||||    
T  47909697 ttaatagcagttttagccccctaactttcccaaagttgcgattttagccccctaag 47909752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Original strand, 15348018 - 15348080
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||| ||||||||||||||| |||||| |||| || ||||||| | |||||||||||    
T  15348018 ctacaaaaccacccctaagttttgcatctgtggaagttatggcccccaaggtcaattttgact 15348080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 21505927 - 21505873
Alignment:
Q  390 taatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    ||||||||||||||| ||| |||||||  ||||||||| ||||||||||||||||    
T  21505927 taatagcagttttagtcccctaactttttcaaagttgcgattttggccccctaag 21505873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 28472625 - 28472579
Alignment:
Q  452 ctacaataccgcccctaagttttgcacctgtggcagttttgaccccc 498  Q
    |||||| ||||||||||||||||||| |||| ||||||||| |||||    
T  28472625 ctacaaaaccgcccctaagttttgcaactgtagcagttttggccccc 28472579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 8073957 - 8074002
Alignment:
Q  467 taagttttgcacctgtggcagttttgacccccaaagccaattttga 512  Q
    |||||||||||  ||||||||||||| ||||||| |||||||||||    
T  8073957 taagttttgcatatgtggcagttttggcccccaaggccaattttga 8074002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 510
Target Start/End: Complemental strand, 14247622 - 14247493
Alignment:
Q  378 ttatattaggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgccc-ctaagttttgc 476  Q
    |||| ||||| ||||||||||||||| ||| |||||||  ||||||||| |||| | |||| |||         |||||| |||| || |||||||||||    
T  14247622 ttattttaggcttaatagcagttttatcccctaacttttccaaagttgcgatttcgaccccttaa----aaaaactacaaaaccgtccgctaagttttgc 14247527  T
Q  477 acctgtggcagttttgacccccaaagccaatttt 510  Q
    || ||||||||||||| |  ||||||||||||||    
T  14247526 acatgtggcagttttggcatccaaagccaatttt 14247493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 35250431 - 35250374
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaa 442  Q
    |||||||||||| ||||| |||| |||||||  ||||||||| |||||| ||||||||    
T  35250431 aggtttaatagcggtttttgcccctaactttgacaaagttgcgattttgaccccctaa 35250374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 515
Target Start/End: Complemental strand, 9500136 - 9500084
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    |||||||||||||  | ||||| ||||||| ||||||| ||||||||||||||    
T  9500136 cccctaagttttgaccttgtggtagttttggcccccaaggccaattttgactt 9500084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 15106986 - 15107014
Alignment:
Q  380 atattaggtttaatagcagttttagccct 408  Q
    |||||||||||||||||||||||||||||    
T  15106986 atattaggtttaatagcagttttagccct 15107014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 510
Target Start/End: Complemental strand, 19645035 - 19644991
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    |||||||||||| |||| ||||||||| || ||||||||||||||    
T  19645035 ctaagttttgcaactgtagcagttttggcctccaaagccaatttt 19644991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 19645118 - 19645062
Alignment:
Q  383 ttaggtttaatagcagttttagccc-ttaactttcgcaaagttgcaattttggcccc 438  Q
    ||||||||||||||| |||| |||| ||||||||| | ||||||| |||||||||||    
T  19645118 ttaggtttaatagcaattttcgccccttaactttcacgaagttgcgattttggcccc 19645062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 510
Target Start/End: Complemental strand, 43029108 - 43028981
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgtg 483  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||        |||||| |||| |||||||||||| ||  |||     
T  43029108 aggtttaatagcagtttttgcccttaactttcacaaagttgcgattttggccccctaagaaaaaaaactacaaaaccgccccctaagttttacaattgta 43029009  T
Q  484 gcagttttgacccc-caaagccaatttt 510  Q
    ||||||||| |||| ||| |||||||||    
T  43029008 gcagttttggccccacaaggccaatttt 43028981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 14489217 - 14489343
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcacctgtggca 486  Q
    |||||||||||||||||||| ||||||||  |||||||  ||||||||||| ||||         ||||| |||||||| ||||||||||||||||||||    
T  14489217 ttaatagcagttttagccctctaactttccaaaagttgtgattttggccccttaagaaaaaaat-tacaaaaccgccccctaagttttgcacctgtggca 14489315  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    ||||||||| ||||  ||||||||||||    
T  14489316 gttttgacctccaagaccaattttgact 14489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 43028797 - 43028923
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccctaagttttgcacctgtggcag 487  Q
    |||||||||||||||||||  ||||||   ||||||||| ||||||||||||||||        |||||| ||| ||||||||||||||| |||||||||    
T  43028797 ttaatagcagttttagccccctaacttctccaaagttgcgattttggccccctaagaaaaaaaactacaaaaccccccctaagttttgcatctgtggcag 43028896  T
Q  488 ttttgacccccaaagccaattttgact 514  Q
    ||||| || | |  |||||||||||||    
T  43028897 ttttggcctctagggccaattttgact 43028923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 507
Target Start/End: Original strand, 25464 - 25508
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaat 507  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  25464 cccctaagttttgcacctgtggcagttttgacccccaaggccaat 25508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 514
Target Start/End: Complemental strand, 5470643 - 5470521
Alignment:
Q  392 atagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacctgtggcagtt 489  Q
    ||||||||||||||||  ||||||||  |||||||| |||||||||||||||         |||||| ||||||||| ||||||| || |||||||||||    
T  5470643 atagcagttttagccccctaactttcctaaagttgcgattttggccccctaa--aaaaaaactacaaaaccgccccttaagttttacatctgtggcagtt 5470546  T
Q  490 ttgacccccaaagccaattttgact 514  Q
    ||| ||||||| |||||||||||||    
T  5470545 ttggcccccaaggccaattttgact 5470521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 39918437 - 39918564
Alignment:
Q  389 ttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgccc-ctaagttttgcacctgtggca 486  Q
    ||||||| |||||||||||  |||||||| ||||||||| ||||||||||||||||        || ||| | ||||| ||||||||||||  ||||||     
T  39918437 ttaatagtagttttagccccctaactttctcaaagttgcgattttggccccctaagaaaaaaaactgcaaaatcgcccgctaagttttgcatatgtggct 39918536  T
Q  487 gttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||| |||||||||||||    
T  39918537 gttttggcccccaaggccaattttgact 39918564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 515
Target Start/End: Original strand, 25333577 - 25333629
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    ||||||||||||||||||||||||||||||  | |||| ||||||||||||||    
T  25333577 cccctaagttttgcacctgtggcagttttggtctccaaggccaattttgactt 25333629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 6592969 - 6592922
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    ||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  6592969 cccctaagttttgcaactgtagcagttttggcccccaaagccaatttt 6592922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 515
Target Start/End: Original strand, 8857114 - 8857177
Alignment:
Q  453 tacaataccgcc-cctaagttttgcacctgtggcagttttgacccccaaagccaattttgactt 515  Q
    ||||| |||||| |||||||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  8857114 tacaaaaccgcctcctaagttttgcatttgtggcagttttggcccccaatgccaattttgactt 8857177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 514
Target Start/End: Complemental strand, 14943792 - 14943729
Alignment:
Q  452 ctacaataccgccc-ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| ||||||| ||||||||||||||||||||| ||||| ||||||| || ||||||||||    
T  14943792 ctacaaaaccgccctctaagttttgcacctgtggcatttttggcccccaaggctaattttgact 14943729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 16043257 - 16043206
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||| |||||||| |||||||||||||| ||||||| |||||||||||||    
T  16043257 cccctatgttttgcatctgtggcagttttggcccccaaggccaattttgact 16043206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 24472682 - 24472631
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| |||||||||||||| || |||| |||||||||||||    
T  24472682 cccctaagttttgcatctgtggcagttttggccgccaatgccaattttgact 24472631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 25411620 - 25411671
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||||||||||||    
T  25411620 cccctaagttttgcatctgtggcagttttcacccccaataccaattttgact 25411671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 510
Target Start/End: Original strand, 4576544 - 4576669
Alignment:
Q  387 gtttaatagcagttttagcc-cttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccg-cccctaagttttgcacctgtgg 484  Q
    |||||||||||||||||||| | |||||||  ||||||||  ||||||||||||||||        |||||| | || ||| ||||||||||| |||| |    
T  4576544 gtttaatagcagttttagcctcctaactttttcaaagttgtcattttggccccctaagaaaaaaaactacaaaatcgtcccataagttttgcaactgtag 4576643  T
Q  485 cagttttgacccccaaagccaatttt 510  Q
    |||||||| |||||||  ||||||||    
T  4576644 cagttttggcccccaagaccaatttt 4576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 18969177 - 18969221
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||    
T  18969177 ctaagttttgcaattgtagcagttttgacccccaaagccaatttt 18969221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 507
Target Start/End: Original strand, 21361875 - 21362003
Alignment:
Q  380 atattaggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccc-taagttttgcac 478  Q
    |||| ||| ||||||||| |||| |||| |||||||  ||||||||| ||||||||||| ||||        |||||| | | |||| ||||||||||||    
T  21361875 atataaggcttaatagcaatttttgcccctaactttatcaaagttgcgattttggccccttaagaaaaaaaactacaaaaacaccccctaagttttgcac 21361974  T
Q  479 ctgtggcagttttgacccccaaagccaat 507  Q
     ||||||||||||| | ||||| ||||||    
T  21361975 atgtggcagttttggctcccaaggccaat 21362003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 37431625 - 37431673
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  37431625 ctaagttttgcatttgtggcagttttggcccccaaggccaattttgact 37431673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 506
Target Start/End: Complemental strand, 14489447 - 14489404
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaa 506  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||    
T  14489447 cccctaagttttgcaactgtggcagttttggcccccaaggccaa 14489404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 510
Target Start/End: Complemental strand, 31827768 - 31827721
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    ||||||||||||||| |||| ||||||||| ||||||| |||||||||    
T  31827768 cccctaagttttgcaactgtagcagttttggcccccaaggccaatttt 31827721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 37803370 - 37803319
Alignment:
Q  459 accgcccctaagttttgcacctgtggcagttttgacccccaaagccaatttt 510  Q
    ||||||| ||||||||||| |||| |||||||||| |||||| |||||||||    
T  37803370 accgcccataagttttgcaactgtagcagttttgatccccaaggccaatttt 37803319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 44617974 - 44617923
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||| |||||||  ||||||||||||    
T  44617974 cccctaagttttgcatttgtggcagttttggcccccaagaccaattttgact 44617923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 34760926 - 34760976
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgac 513  Q
    |||||||||||||||  ||||||||||||| |||||||  |||||||||||    
T  34760926 cccctaagttttgcatatgtggcagttttggcccccaagaccaattttgac 34760976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 6592795 - 6592856
Alignment:
Q  453 tacaataccgcccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    ||||| || ||||||||||||||||  ||||||||||||| ||| ||| || ||||||||||    
T  6592795 tacaaaactgcccctaagttttgcatatgtggcagttttggccctcaatgctaattttgact 6592856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 407
Target Start/End: Original strand, 12948881 - 12948910
Alignment:
Q  378 ttatattaggtttaatagcagttttagccc 407  Q
    ||||||||||||||||||||||||||||||    
T  12948881 ttatattaggtttaatagcagttttagccc 12948910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 500
Target Start/End: Original strand, 34100819 - 34100856
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaa 500  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  34100819 cccctaagttttgcaactgtagcagttttgacccccaa 34100856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 463 - 511
Target Start/End: Original strand, 4925518 - 4925566
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttg 511  Q
    |||||||||||||||  |||||||||||||||||| ||  |||||||||    
T  4925518 cccctaagttttgcatatgtggcagttttgacccctaagaccaattttg 4925566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 6592722 - 6592782
Alignment:
Q  384 taggtttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| |||||||||||||||| ||| |||||||  ||||||||| |||||| |||||||||    
T  6592722 taggcttaatagcagttttagccccctaacttttccaaagttgcgattttgaccccctaag 6592782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 514
Target Start/End: Complemental strand, 21024676 - 21024644
Alignment:
Q  482 tggcagttttgacccccaaagccaattttgact 514  Q
    ||||||||||| |||||||||||||||||||||    
T  21024676 tggcagttttggcccccaaagccaattttgact 21024644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 21358425 - 21358361
Alignment:
Q  380 atattaggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| ||| |||||||||||||| ||||  |||||||| ||||||||  ||||||||||||||||    
T  21358425 atataaggcttaatagcagtttttgccccctaactttctcaaagttgtgattttggccccctaag 21358361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 19995 - 20043
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  19995 ctaagttttgcatctgtggcagttttggcccccaaagccaattttgact 20043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 514
Target Start/End: Original strand, 145364 - 145483
Alignment:
Q  397 agttttag-cccttaactttcgcaaagttgcaattttggccccctaagnnnnnnnnctacaataccgcccct-aagttttgcacctgtggcagttttgac 494  Q
    |||||||| ||| |||||||| ||||||||| |||||| |||||||||        ||||||  |||||||| || ||||||| |||||||||||||| |    
T  145364 agttttagtcccctaactttctcaaagttgcgattttgcccccctaagaaaaaaaactacaaagccgccccttaaattttgcatctgtggcagttttggc 145463  T
Q  495 ccccaaagccaattttgact 514  Q
    |||||| |||||||||||||    
T  145464 ccccaaggccaattttgact 145483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 3637 - 3697
Alignment:
Q  384 taggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 3637 - 3697
Alignment:
Q  384 taggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||    
T  3637 taggcttaatagcagttttagccccctaactttcccaaagttgcgattttggccccctaag 3697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 443
Target Start/End: Original strand, 1469 - 1529
Alignment:
Q  384 taggtttaatagcagttttagccct-taactttcgcaaagttgcaattttggccccctaag 443  Q
    |||| |||||||||||||||||||  |||||||| ||||||||  ||||||||||||||||    
T  1469 taggcttaatagcagttttagccccctaactttcacaaagttgagattttggccccctaag 1529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 511
Target Start/End: Complemental strand, 19264 - 19216
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttg 511  Q
    |||||||||||||||| ||||| ||||||| ||||||| ||||||||||    
T  19264 cccctaagttttgcacatgtggtagttttggcccccaaggccaattttg 19216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 19652 - 19600
Alignment:
Q  389 ttaatagcagttttag-cccttaactttcgcaaagttgcaattttggccccct 440  Q
    |||||||||||||||| ||| |||||||  ||||||||| |||||||||||||    
T  19652 ttaatagcagttttagtcccctaactttttcaaagttgcgattttggccccct 19600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 9490 - 9541
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||  ||||||| |||||||||||||    
T  9490 cccctaagttttgcatatgtggcagttttagcccccaaggccaattttgact 9541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 203411 - 203360
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  |||| |||||||| ||||||||| |||||||||||    
T  203411 cccctaagttttgcatttgtgacagttttggcccccaaagtcaattttgact 203360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 514
Target Start/End: Original strand, 76941 - 76991
Alignment:
Q  463 cccctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||||||  ||||||||||||| ||||||| |||||||||||||    
T  76941 cccctaagttttgcatttgtggcagttttg-cccccaaggccaattttgact 76991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0372 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0372
Description:

Target: scaffold0372; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 443
Target Start/End: Complemental strand, 424 - 366
Alignment:
Q  385 aggtttaatagcagttttagcccttaactttcgcaaagttgcaattttggccccctaag 443  Q
    |||||| |||||||||||| ||  |||||||| |||||||||  |||||||||||||||    
T  424 aggtttgatagcagttttaacctctaactttcccaaagttgcgcttttggccccctaag 366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 514
Target Start/End: Complemental strand, 46307 - 46259
Alignment:
Q  466 ctaagttttgcacctgtggcagttttgacccccaaagccaattttgact 514  Q
    |||||||||||| ||||| |||||||| ||||||| | |||||||||||    
T  46307 ctaagttttgcatctgtgacagttttggcccccaaggtcaattttgact 46259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University